Factsheet for Bra001380.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73906	Canola	endoplasmic reticulum, extracellular, plasma membrane	95.39	99.52
CDX73903	Canola	endoplasmic reticulum, extracellular, plasma membrane	95.39	99.52
Bra029868.1-P	Field mustard	plasma membrane	78.34	80.95
Bra034146.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	69.12	76.14
AT3G10780.1	Thale cress	endoplasmic reticulum, plasma membrane	71.43	71.43
Bra027911.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	47.93	48.15
Bra030786.1-P	Field mustard	extracellular	46.54	47.87
Bra020010.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	46.54	47.64
Bra038147.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	47.0	47.44
Bra016401.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	46.54	41.74
Bra026866.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	36.41	37.26
Bra024781.1-P	Field mustard	endoplasmic reticulum, extracellular	35.48	35.98
Bra024694.1-P	Field mustard	endoplasmic reticulum, plasma membrane	33.64	34.11
Bra016283.1-P	Field mustard	endoplasmic reticulum	33.64	34.11
Bra026559.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	33.64	33.8
Bra004382.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	31.8	32.09
Bra036221.1-P	Field mustard	endoplasmic reticulum, extracellular	31.34	31.48
Bra033081.1-P	Field mustard	golgi, plasma membrane, plastid	30.41	29.73
Bra016715.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	25.35	27.36
Bra017957.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	32.72	22.83

Protein Annotations

MapMan:22.3.5.2	EnsemblPlantsGene:Bra001380	EnsemblPlants:Bra001380.1	EnsemblPlants:Bra001380.1-P	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021
InterPro:GOLD_dom	InterPro:IPR009038	UniProt:M4CB01	PFAM:PF01105	PFscan:PS50866	PANTHER:PTHR22811
PANTHER:PTHR22811:SF76	SMART:SM01190	SignalP:SignalP-noTM	InterPro:TMP21-related	TMHMM:TMhelix	UniParc:UPI00025406A5

Description

AT3G10780 (E=3e-084) | emp24/gp25L/p24 family protein

Coordinates

chrA03:+:16083599..16085796

Molecular Weight (calculated)

24378.5 Da

IEP (calculated)

7.979

GRAVY (calculated)

-0.041

Length

217 amino acids

Sequence
(BLAST)

001: MTISPLLFIG LICLAGGGSL LPAEAIWLTI PSSGERCVYE MIQANVVVVG DYLCIDQDNV GFGPTIDIHV TSPNGKELYK KTNETHGQFA FTTSETGTYF
101: ACLSSHHDQS HYTVNGTAIV SLDWKMGIRT KDWDAVAKKQ KIEAGVELEL RKSEERVNEI SANIIYLRVR EAYMREVNDK TNKRVAQLSF MSLGLSITVS
201: LFQVWHLKRF FLKKKLI

Best Arabidopsis Sequence Match ( AT3G10780.1 )
(BLAST)

001: MAISPVLFIG LIYLAGGGSL FPGVEAIWLT VPESGERCVY EEIQANVVVV LDYICIDDAF TQLGPTLDVR VTSPYGKELY KIANVTHGQA AFTTSESGTF
101: LACLAMHHDQ SHHSVNSSVI VSLDWKMGIR AKDWDSVAKK EKIEGVELEI RRSTEYASAI RANILYLRIR EAYMREINEK TNTRVNQLGL MSLGVAIVVS
201: ISQVLYLKRY FLKKKLI

Arabidopsis Description

Transmembrane emp24 domain-containing protein p24delta6 [Source:UniProtKB/Swiss-Prot;Acc:F4J4Y0]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.