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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 8
  • golgi 5
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY08577 Canola plasma membrane 100.0 100.0
CDY00971 Canola plasma membrane 99.52 99.52
Bra001380.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 80.95 78.34
Bra034146.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 68.1 72.59
AT3G10780.1 Thale cress endoplasmic reticulum, plasma membrane 69.52 67.28
Bra027911.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 48.1 46.76
Bra038147.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 46.19 45.12
Bra030786.1-P Field mustard extracellular 44.76 44.55
Bra020010.1-P Field mustard endoplasmic reticulum, extracellular, golgi 43.81 43.4
Bra016401.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 45.24 39.26
Bra024781.1-P Field mustard endoplasmic reticulum, extracellular 35.71 35.05
Bra026866.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 35.24 34.91
Bra024694.1-P Field mustard endoplasmic reticulum, plasma membrane 31.43 30.84
Bra026559.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 30.95 30.09
Bra016283.1-P Field mustard endoplasmic reticulum 30.48 29.91
Bra036221.1-P Field mustard endoplasmic reticulum, extracellular 30.48 29.63
Bra033081.1-P Field mustard golgi, plasma membrane, plastid 29.52 27.93
Bra004382.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 28.57 27.91
Bra016715.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 22.86 23.88
Bra017957.1-P Field mustard endoplasmic reticulum, golgi, vacuole 33.33 22.51
Protein Annotations
EnsemblPlants:Bra029868.1EnsemblPlants:Bra029868.1-PEnsemblPlantsGene:Bra029868GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:GOLD_domInterPro:IPR009038InterPro:TMP21-relatedPANTHER:PTHR22811PANTHER:PTHR22811:SF76PFAM:PF01105
PFscan:PS50866SignalP:SignalP-noTMSMART:SM01190TMHMM:TMhelixUniParc:UPI0002547851UniProt:M4EM48
MapMan:22.3.5.2:::::
Description
AT3G10780 (E=4e-075) | emp24/gp25L/p24 family protein
Coordinates
chrA05:-:21924409..21925796
Molecular Weight (calculated)
23630.7 Da
IEP (calculated)
7.901
GRAVY (calculated)
0.083
Length
210 amino acids
Sequence
(BLAST)
001: MTISPLLFIG LICLAGGGSL LPAAEAIWLT VPSSGERCVY EEIHANVVVV VDYLCIDQNN IGLGPTVDVR VNSAYGKELY KKTNETHGQF AFTTSESGTY
101: LACFLIHHDQ THYTASNSTA IVNIDWKMGI QTKDWDAGVE LELRKSSERI TEIRANILYL KFRESAMREV NEKTNKRVAQ LSFISLGLCL IVSLFQVWHL
201: KRFFLKKKLI
Best Arabidopsis Sequence Match ( AT3G10780.1 )
(BLAST)
001: MAISPVLFIG LIYLAGGGSL FPGVEAIWLT VPESGERCVY EEIQANVVVV LDYICIDDAF TQLGPTLDVR VTSPYGKELY KIANVTHGQA AFTTSESGTF
101: LACLAMHHDQ SHHSVNSSVI VSLDWKMGIR AKDWDSVAKK EKIEGVELEI RRSTEYASAI RANILYLRIR EAYMREINEK TNTRVNQLGL MSLGVAIVVS
201: ISQVLYLKRY FLKKKLI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta6 [Source:UniProtKB/Swiss-Prot;Acc:F4J4Y0]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.