Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029868.1-P | Field mustard | plasma membrane | 99.52 | 99.52 |
| CDY08577 | Canola | plasma membrane | 99.52 | 99.52 |
| CDX73903 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 80.48 | 81.25 |
| CDX73906 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 80.48 | 81.25 |
| CDY00701 | Canola | plasma membrane | 80.0 | 80.77 |
| CDY36275 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 67.62 | 72.08 |
| AT3G10780.1 | Thale cress | endoplasmic reticulum, plasma membrane | 69.52 | 67.28 |
| CDY37184 | Canola | endoplasmic reticulum, peroxisome, plastid | 13.33 | 56.0 |
| CDX95293 | Canola | endoplasmic reticulum, extracellular, golgi | 48.1 | 46.76 |
| CDY39938 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 48.1 | 46.76 |
| CDY04681 | Canola | endoplasmic reticulum | 45.71 | 45.71 |
| CDY31789 | Canola | plasma membrane | 46.67 | 45.58 |
| CDY23801 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 46.19 | 45.12 |
| CDY31078 | Canola | endoplasmic reticulum | 44.76 | 41.96 |
| CDY20688 | Canola | endoplasmic reticulum, golgi, nucleus | 44.76 | 41.96 |
| CDX93498 | Canola | endoplasmic reticulum, golgi, plasma membrane | 43.81 | 41.07 |
| CDY50894 | Canola | endoplasmic reticulum, golgi, plasma membrane | 43.81 | 41.07 |
| CDX96570 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 45.24 | 40.77 |
| CDY38827 | Canola | endoplasmic reticulum, extracellular, vacuole | 44.76 | 39.5 |
| CDY08168 | Canola | endoplasmic reticulum | 30.95 | 39.39 |
| CDY16125 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 35.71 | 35.38 |
| CDY45170 | Canola | endoplasmic reticulum, extracellular | 35.71 | 35.05 |
| CDY33785 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 35.24 | 34.91 |
| CDY03005 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 35.24 | 34.58 |
| CDY62212 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 34.29 | 33.8 |
| CDX96872 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 34.29 | 33.8 |
| CDY00102 | Canola | cytosol | 26.19 | 32.54 |
| CDX85047 | Canola | endoplasmic reticulum | 31.9 | 31.31 |
| CDY16181 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 31.43 | 30.84 |
| CDY09334 | Canola | endoplasmic reticulum, extracellular, vacuole | 31.43 | 30.56 |
| CDY53680 | Canola | endoplasmic reticulum, extracellular, vacuole | 30.95 | 30.09 |
| CDY61620 | Canola | endoplasmic reticulum | 30.48 | 29.91 |
| CDY19998 | Canola | endoplasmic reticulum, extracellular | 30.48 | 29.63 |
| CDY24142 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 30.0 | 29.44 |
| CDX85243 | Canola | mitochondrion | 30.95 | 29.28 |
| CDY44411 | Canola | golgi, plasma membrane, plastid | 29.52 | 27.93 |
| CDY40925 | Canola | endoplasmic reticulum | 28.57 | 27.91 |
| CDY04053 | Canola | endoplasmic reticulum | 29.52 | 27.8 |
| CDX95934 | Canola | vacuole | 28.1 | 27.44 |
Protein Annotations
| EnsemblPlants:CDY00971 | EnsemblPlantsGene:GSBRNA2T00110984001 | GO:A0A078EIL7 | InterPro:GOLD_dom | InterPro:IPR009038 | InterPro:TMP21-related |
| PANTHER:PTHR22811 | PANTHER:PTHR22811:SF76 | PFAM:PF01105 | PFscan:PS50866 | ProteinID:CDY00971 | ProteinID:CDY00971.1 |
| SignalP:SignalP-noTM | SMART:SM01190 | TMHMM:TMhelix | UniParc:UPI0004EF38BF | MapMan:22.3.5.2 | : |
Description
BnaC05g42290D
Coordinates
chrLK031923:+:358201..359669
Molecular Weight (calculated)
23648.7 Da
IEP (calculated)
7.901
GRAVY (calculated)
0.071
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MTISPLLFIG LICLAGGGSL LPAAEAIWLT VPSSGERCVY EEIHANVVVV VDYLCIDQNN IGLGPTVDVR VNSAYGKELY KKTNETHGQF AFTTSESGTY
101: LACFLIHHDQ THYTASNSTA IVNIDWKMGI QTKDWDAGVE LELRKSSERI TEIRANILYL KFRESAMREV NEKTNKRVAQ LSFISLGLCL MVSLFQVWHL
201: KRFFLKKKLI
101: LACFLIHHDQ THYTASNSTA IVNIDWKMGI QTKDWDAGVE LELRKSSERI TEIRANILYL KFRESAMREV NEKTNKRVAQ LSFISLGLCL MVSLFQVWHL
201: KRFFLKKKLI
001: MAISPVLFIG LIYLAGGGSL FPGVEAIWLT VPESGERCVY EEIQANVVVV LDYICIDDAF TQLGPTLDVR VTSPYGKELY KIANVTHGQA AFTTSESGTF
101: LACLAMHHDQ SHHSVNSSVI VSLDWKMGIR AKDWDSVAKK EKIEGVELEI RRSTEYASAI RANILYLRIR EAYMREINEK TNTRVNQLGL MSLGVAIVVS
201: ISQVLYLKRY FLKKKLI
101: LACLAMHHDQ SHHSVNSSVI VSLDWKMGIR AKDWDSVAKK EKIEGVELEI RRSTEYASAI RANILYLRIR EAYMREINEK TNTRVNQLGL MSLGVAIVVS
201: ISQVLYLKRY FLKKKLI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta6 [Source:UniProtKB/Swiss-Prot;Acc:F4J4Y0]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.