CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
endoplasmic reticulum 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00102	Canola	cytosol	68.47	89.94
CDY19998	Canola	endoplasmic reticulum, extracellular	86.49	88.89
CDY44411	Canola	golgi, plasma membrane, plastid	85.14	85.14
CDY04053	Canola	endoplasmic reticulum	84.23	83.86
AT3G29070.1	Thale cress	mitochondrion	79.28	78.22
CDY37184	Canola	endoplasmic reticulum, peroxisome, plastid	14.86	66.0
GSMUA_AchrUn_...	Banana	cytosol	46.85	61.54
GSMUA_Achr1P21760_001	Banana	cytosol	46.4	60.95
VIT_14s0108g01140.t01	Wine grape	extracellular	53.6	56.67
EER92205	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	54.05	56.07
CDY62212	Canola	endoplasmic reticulum, extracellular, plasma membrane	51.8	53.99
CDX96872	Canola	endoplasmic reticulum, extracellular, plasma membrane	51.8	53.99
CDY16181	Canola	endoplasmic reticulum, plasma membrane, vacuole	51.8	53.74
CDY33785	Canola	endoplasmic reticulum, extracellular, plasma membrane	50.9	53.3
CDX85047	Canola	endoplasmic reticulum	51.35	53.27
KRH18453	Soybean	golgi, plasma membrane, vacuole	51.8	53.24
CDY16125	Canola	endoplasmic reticulum, extracellular, plasma membrane	50.45	52.83
CDY09334	Canola	endoplasmic reticulum, extracellular, vacuole	51.35	52.78
CDY53680	Canola	endoplasmic reticulum, extracellular, vacuole	50.9	52.31
KRG93569	Soybean	endoplasmic reticulum, extracellular, plasma membrane	50.45	51.85
TraesCS2B01G180800.1	Wheat	mitochondrion	52.7	51.32
CDY03005	Canola	endoplasmic reticulum, extracellular, plasma membrane	49.1	50.93
TraesCS2D01G161400.1	Wheat	endoplasmic reticulum, plastid	52.25	50.88
TraesCS2A01G155600.1	Wheat	golgi	52.25	50.88
Os07t0632700-01	Rice	plasma membrane	52.7	50.87
Os03t0376000-01	Rice	endoplasmic reticulum, plasma membrane	53.15	50.86
CDX95934	Canola	vacuole	49.1	50.7
CDY40925	Canola	endoplasmic reticulum	48.65	50.23
KRH13540	Soybean	cytosol	17.57	50.0
HORVU2Hr1G028220.5	Barley	endoplasmic reticulum, extracellular	52.25	50.0
CDY61620	Canola	endoplasmic reticulum	48.2	50.0
EER97600	Sorghum	mitochondrion	51.35	49.78
Zm00001d022238_P001	Maize	mitochondrion	51.35	49.78
KRH01218	Soybean	endoplasmic reticulum, plasma membrane, vacuole	48.65	49.54
CDY24142	Canola	endoplasmic reticulum, plasma membrane, vacuole	47.75	49.53
CDY45170	Canola	endoplasmic reticulum, extracellular	47.75	49.53
Zm00001d006951_P001	Maize	mitochondrion	50.0	48.47
Zm00001d047163_P001	Maize	endoplasmic reticulum, extracellular, vacuole	42.79	38.31
CDY31789	Canola	plasma membrane	34.23	35.35
CDY31078	Canola	endoplasmic reticulum	35.59	35.27
CDY20688	Canola	endoplasmic reticulum, golgi, nucleus	35.59	35.27
CDY23801	Canola	endoplasmic reticulum, extracellular, plasma membrane	33.78	34.88
CDY04681	Canola	endoplasmic reticulum	32.88	34.76
CDY50894	Canola	endoplasmic reticulum, golgi, plasma membrane	34.23	33.93
CDX95293	Canola	endoplasmic reticulum, extracellular, golgi	32.88	33.8
CDX93498	Canola	endoplasmic reticulum, golgi, plasma membrane	33.78	33.48
CDY39938	Canola	endoplasmic reticulum, extracellular, plasma membrane	32.43	33.33
CDX73903	Canola	endoplasmic reticulum, extracellular, plasma membrane	29.73	31.73
CDX73906	Canola	endoplasmic reticulum, extracellular, plasma membrane	29.73	31.73
CDX96570	Canola	endoplasmic reticulum, extracellular, plasma membrane	32.88	31.33
CDY00701	Canola	plasma membrane	29.28	31.25
CDY00971	Canola	plasma membrane	29.28	30.95
CDY08577	Canola	plasma membrane	29.28	30.95
CDY38827	Canola	endoplasmic reticulum, extracellular, vacuole	31.98	29.83
CDY08168	Canola	endoplasmic reticulum	22.07	29.7
CDY36275	Canola	endoplasmic reticulum, extracellular, plasma membrane	26.13	29.44

Protein Annotations

EnsemblPlants:CDX85243	EnsemblPlantsGene:GSBRNA2T00142883001	GO:A0A078DD65	InterPro:GOLD_dom	InterPro:IPR009038	InterPro:TMP21-related
PANTHER:PTHR22811	PANTHER:PTHR22811:SF47	PFAM:PF01105	PFscan:PS50866	ProteinID:CDX85243	ProteinID:CDX85243.1
SEG:seg	SMART:SM01190	TMHMM:TMhelix	UniParc:UPI0004EBC293	MapMan:22.3.5.2	:

Description

BnaC07g25540D

Coordinates

chrLK031841:+:577771..578954

Molecular Weight (calculated)

25558.1 Da

IEP (calculated)

7.347

GRAVY (calculated)

-0.229

Length

222 amino acids

Sequence
(BLAST)

001: MVLLSSRCKI HMTTSRWIII TMTLMLMRIG ESMRLDLESG MTKCISDDIK LNYMTVGTYT VVNPNEAHHL PASHKIHVTV TSPKGRTQHH AENVESGKFV
101: FTAMEDGDYT TCFVAPEFRP PAKFAVDFEW KSGVEAKDWA NIAKRDHINM LEVEVRKLLD TTESIHDEMF ELREREREMQ ELNRSTNSRM AALSLISLVF
201: TLSVAGLQLW HLKSFLERKK LL

Best Arabidopsis Sequence Match ( AT3G29070.1 )
(BLAST)

001: MDLLPSRYKI HKTKLRWILT MMTMMMMMVM RRGESMRLDM ESGNTKCISD DIKTNYMTVG TYSIVNPNEG HHLPPSHKLF VTVSSPKGKS HHHAENVESG
101: KFVFTAEETG DYMTCFVAPG YRPTAKFAVD FEWKSGVEAK DWTTIAKRGQ ITMLEVEVRK LLDVTETIHE EMFQLIERER EMQELNRSTN SRMAALSLLS
201: FVVTMSVAGL QLRHLKSFLE RKKLL

Arabidopsis Description

Transmembrane emp24 domain-containing protein p24delta11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJV9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.