Factsheet for TraesCS2A01G155600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 6
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G180800.1	Wheat	mitochondrion	97.81	97.81
TraesCS2D01G161400.1	Wheat	endoplasmic reticulum, plastid	96.05	96.05
HORVU2Hr1G028220.5	Barley	endoplasmic reticulum, extracellular	91.23	89.66
Zm00001d022238_P001	Maize	mitochondrion	84.65	84.28
EER97600	Sorghum	mitochondrion	84.21	83.84
Zm00001d006951_P001	Maize	mitochondrion	83.77	83.41
Os07t0632700-01	Rice	plasma membrane	82.46	81.74
GSMUA_Achr1P21760_001	Banana	cytosol	54.39	73.37
GSMUA_AchrUn_...	Banana	cytosol	53.95	72.78
CDY37184	Canola	endoplasmic reticulum, peroxisome, plastid	14.91	68.0
VIT_01s0182g00030.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	60.96	65.57
VIT_14s0108g01140.t01	Wine grape	extracellular	58.77	63.81
KRH50555	Soybean	endoplasmic reticulum	61.84	63.8
KRG89554	Soybean	endoplasmic reticulum	60.53	62.73
KRH13540	Soybean	cytosol	21.05	61.54
PGSC0003DMT400007416	Potato	endoplasmic reticulum, extracellular, vacuole	54.82	58.41
KRH18453	Soybean	golgi, plasma membrane, vacuole	55.26	58.33
KRG93569	Soybean	endoplasmic reticulum, extracellular, plasma membrane	55.26	58.33
Solyc04g005570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	54.82	58.14
CDY00102	Canola	cytosol	42.98	57.99
AT1G26690.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	53.95	57.48
PGSC0003DMT400073002	Potato	extracellular	53.51	57.28
CDY33785	Canola	endoplasmic reticulum, extracellular, plasma membrane	52.63	56.6
Bra026866.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	52.63	56.6
CDY16125	Canola	endoplasmic reticulum, extracellular, plasma membrane	52.19	56.13
PGSC0003DMT400062438	Potato	mitochondrion	53.07	56.02
Solyc05g013130.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	52.19	55.87
CDX85047	Canola	endoplasmic reticulum	52.19	55.61
Solyc01g010940.2.1	Tomato	nucleus, plastid	52.63	55.56
CDY16181	Canola	endoplasmic reticulum, plasma membrane, vacuole	51.75	55.14
KRH70789	Soybean	cytosol, vacuole	17.54	54.79
AT1G14010.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	50.88	54.72
Bra024694.1-P	Field mustard	endoplasmic reticulum, plasma membrane	51.32	54.67
CDY62212	Canola	endoplasmic reticulum, extracellular, plasma membrane	50.44	53.99
CDX96872	Canola	endoplasmic reticulum, extracellular, plasma membrane	50.44	53.99
CDX95934	Canola	vacuole	50.44	53.49
Bra004382.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	50.44	53.49
Bra036221.1-P	Field mustard	endoplasmic reticulum, extracellular	50.44	53.24
CDY19998	Canola	endoplasmic reticulum, extracellular	50.44	53.24
KRH70788	Soybean	extracellular	33.33	53.15
CDY40925	Canola	endoplasmic reticulum	50.0	53.02
AT2G03290.1	Thale cress	extracellular	49.12	52.58
AT1G69460.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	49.12	52.34
CDX85243	Canola	mitochondrion	50.88	52.25
CDY04053	Canola	endoplasmic reticulum	50.88	52.02
CDY53680	Canola	endoplasmic reticulum, extracellular, vacuole	49.12	51.85
Bra033081.1-P	Field mustard	golgi, plasma membrane, plastid	50.44	51.8
CDY44411	Canola	golgi, plasma membrane, plastid	50.44	51.8
Bra016283.1-P	Field mustard	endoplasmic reticulum	48.25	51.4
Bra024781.1-P	Field mustard	endoplasmic reticulum, extracellular	48.25	51.4
CDY45170	Canola	endoplasmic reticulum, extracellular	48.25	51.4
CDY61620	Canola	endoplasmic reticulum	48.25	51.4
CDY09334	Canola	endoplasmic reticulum, extracellular, vacuole	48.68	51.39
Bra026559.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	48.68	51.39
CDY03005	Canola	endoplasmic reticulum, extracellular, plasma membrane	47.81	50.93
CDY24142	Canola	endoplasmic reticulum, plasma membrane, vacuole	47.37	50.47
KRH01218	Soybean	endoplasmic reticulum, plasma membrane, vacuole	47.37	49.54
AT3G29070.1	Thale cress	mitochondrion	47.81	48.44
AT2G03040.1	Thale cress	extracellular	34.21	46.99
TraesCS7A01G169500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	39.91	46.91
TraesCS6A01G330200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	39.91	43.13
Bra016715.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	37.72	42.79
TraesCS5A01G235500.1	Wheat	extracellular, vacuole	34.21	37.14

Protein Annotations

EnsemblPlants:TraesCS2A01G155600.1	EnsemblPlantsGene:TraesCS2A01G155600	InterPro:GOLD_dom	InterPro:IPR009038	InterPro:TMP21-related	ncoils:Coil
PANTHER:PTHR22811	PANTHER:PTHR22811:SF112	PFAM:PF01105	PFscan:PS50866	SEG:seg	SignalP:SignalP-noTM
SMART:SM01190	TMHMM:TMhelix	MapMan:22.3.5.2	:	:	:

Description

No Description!

Coordinates

chr2A:-:102680468..102683061

Molecular Weight (calculated)

25777.0 Da

IEP (calculated)

8.096

GRAVY (calculated)

-0.257

Length

228 amino acids

Sequence
(BLAST)

001: MAARRPGSPA SRWLRPSTLL LLAAVLFAAS PSARALRFDL ESGHTKCISD EIKVDSMAVG KYSVVAPDPS YPDAQLPESH RVSLRVTSPY GNSMHYSENV
101: QSGHFAFTAV EAGDYLACFW APDHKPPVTV TFEFDWKSGV MAKDWSNVAK KGKVDMMELE LKKLEDTIKS IHEEMFYLRE REEEMQNINR QTSSRMGWLS
201: FLSLGICLSV AGLQLWHLKT FFERKKLL

Best Arabidopsis Sequence Match ( AT1G26690.1 )
(BLAST)

001: MFLRSLNLCT ILLFLAISSQ VSQSLHFELQ SGRTKCISED IKSNSMTVGK YTVVNPNEAH PSPQSHKISI RVTSSYGNTY HHAEDVESGQ FAFTAVESGD
101: YMACYTAVDH KPEVTLSIDF DWRTGVQSKS WSSVAKKSQV EVMEFDVKRL IETVNSIHEE MFYLREREEE MQNLNRATNS KMAWLSFLSL FVCLGVAGMQ
201: FVHLKTFFEK KKVI

Arabidopsis Description

Transmembrane emp24 domain-containing protein p24delta9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQY3]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.