Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G03040.1 | Thale cress | extracellular | 76.53 | 98.19 |
| CDY37184 | Canola | endoplasmic reticulum, peroxisome, plastid | 19.25 | 82.0 |
| CDY03005 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 73.24 | 72.9 |
| CDY45170 | Canola | endoplasmic reticulum, extracellular | 72.77 | 72.43 |
| Bra024781.1-P | Field mustard | endoplasmic reticulum, extracellular | 72.77 | 72.43 |
| CDY09334 | Canola | endoplasmic reticulum, extracellular, vacuole | 70.42 | 69.44 |
| Bra026559.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 70.42 | 69.44 |
| AT1G14010.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 68.08 | 68.4 |
| CDY53680 | Canola | endoplasmic reticulum, extracellular, vacuole | 69.01 | 68.06 |
| AT1G26690.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 63.38 | 63.08 |
| GSMUA_Achr1P21760_001 | Banana | cytosol | 49.3 | 62.13 |
| GSMUA_AchrUn_... | Banana | cytosol | 49.3 | 62.13 |
| AT1G69460.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 61.5 | 61.22 |
| KRH50555 | Soybean | endoplasmic reticulum | 61.5 | 59.28 |
| VIT_01s0182g00030.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 58.22 | 58.49 |
| KRG89554 | Soybean | endoplasmic reticulum | 59.62 | 57.73 |
| PGSC0003DMT400007416 | Potato | endoplasmic reticulum, extracellular, vacuole | 56.34 | 56.07 |
| Solyc04g005570.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 55.87 | 55.35 |
| PGSC0003DMT400073002 | Potato | extracellular | 53.99 | 53.99 |
| PGSC0003DMT400062438 | Potato | mitochondrion | 53.99 | 53.24 |
| Solyc05g013130.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 53.05 | 53.05 |
| EER92205 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 53.05 | 52.8 |
| Solyc01g010940.2.1 | Tomato | nucleus, plastid | 53.05 | 52.31 |
| TraesCS2B01G180800.1 | Wheat | mitochondrion | 53.52 | 50.0 |
| Zm00001d022238_P001 | Maize | mitochondrion | 53.52 | 49.78 |
| Os07t0632700-01 | Rice | plasma membrane | 53.52 | 49.57 |
| TraesCS2D01G161400.1 | Wheat | endoplasmic reticulum, plastid | 53.05 | 49.56 |
| EER97600 | Sorghum | mitochondrion | 53.05 | 49.34 |
| Os03t0376000-01 | Rice | endoplasmic reticulum, plasma membrane | 53.52 | 49.14 |
| TraesCS2A01G155600.1 | Wheat | golgi | 52.58 | 49.12 |
| Zm00001d006951_P001 | Maize | mitochondrion | 52.58 | 48.91 |
| AT3G29070.1 | Thale cress | mitochondrion | 51.64 | 48.89 |
| HORVU2Hr1G028220.5 | Barley | endoplasmic reticulum, extracellular | 52.58 | 48.28 |
| KRH70789 | Soybean | cytosol, vacuole | 16.43 | 47.95 |
| KRH70788 | Soybean | extracellular | 30.99 | 46.15 |
| AT1G09580.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 37.09 | 36.41 |
| AT1G21900.1 | Thale cress | plasma membrane | 36.15 | 35.65 |
| AT1G57620.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 35.21 | 35.38 |
| Zm00001d047163_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 38.5 | 33.06 |
| AT3G10780.1 | Thale cress | endoplasmic reticulum, plasma membrane | 30.99 | 30.41 |
Protein Annotations
| MapMan:22.3.5.2 | EntrezGene:814858 | ProteinID:AAD17445.1 | ProteinID:AAM15035.1 | ProteinID:AEC05684.1 | ArrayExpress:AT2G03290 |
| EnsemblPlantsGene:AT2G03290 | RefSeq:AT2G03290 | TAIR:AT2G03290 | RefSeq:AT2G03290-TAIR-G | EnsemblPlants:AT2G03290.1 | TAIR:AT2G03290.1 |
| EMBL:BT015148 | EMBL:BT015664 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | GO:GO:0032580 | GO:GO:0033116 | InterPro:GOLD_dom |
| InterPro:IPR009038 | RefSeq:NP_178428.3 | UniProt:O81045 | PFAM:PF01105 | PFscan:PS50866 | PANTHER:PTHR22811 |
| PANTHER:PTHR22811:SF47 | SMART:SM01190 | SignalP:SignalP-noTM | InterPro:TMP21-related | TMHMM:TMhelix | UniParc:UPI000009CF32 |
| SEG:seg | : | : | : | : | : |
Description
Transmembrane emp24 domain-containing protein p24delta8 [Source:UniProtKB/Swiss-Prot;Acc:O81045]
Coordinates
chr2:+:999406..1000688
Molecular Weight (calculated)
24566.7 Da
IEP (calculated)
6.627
GRAVY (calculated)
-0.274
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLCRSSILL LIIALLSPRT LSMRYELKSS KTKCIGEEIH ENAMSIGKYF IVNPNEDNHP LPDSHKIIVK VMPPQGKNLH EADKVEAGQF SFTAYENGSY
101: VACITAIDYK PETTLTIDFD WKTGVHSKEW TNVAKKSQVD MMEYQVKTLM DTVISIHEEM YYLREREEEM QELNRSTNSK MAWLSFGSLV VCLSVAGLQF
201: WHLKTFFEKK KLI
101: VACITAIDYK PETTLTIDFD WKTGVHSKEW TNVAKKSQVD MMEYQVKTLM DTVISIHEEM YYLREREEEM QELNRSTNSK MAWLSFGSLV VCLSVAGLQF
201: WHLKTFFEKK KLI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.