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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:
  • endoplasmic reticulum 6
  • golgi 6
  • extracellular 5
  • vacuole 4
  • plasma membrane 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi, plasma membrane
Any Predictor:secretory
BaCelLo:endoplasmic reticulum, extracellular, golgi
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra020010.1-P Field mustard endoplasmic reticulum, extracellular, golgi 79.26 81.13
Bra030786.1-P Field mustard extracellular 78.8 81.04
CDX93498 Canola endoplasmic reticulum, golgi, plasma membrane 79.72 77.23
CDY50894 Canola endoplasmic reticulum, golgi, plasma membrane 78.8 76.34
CDY31078 Canola endoplasmic reticulum 78.8 76.34
CDY20688 Canola endoplasmic reticulum, golgi, nucleus 78.34 75.89
AT1G57620.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 72.81 74.53
KRH48283 Soybean cytosol 25.81 72.73
VIT_12s0034g01440.t01 Wine grape endoplasmic reticulum, extracellular 68.2 68.52
KRH59179 Soybean endoplasmic reticulum 65.9 67.77
TraesCS7D01G170400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 59.91 67.01
TraesCS7A01G169500.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 59.91 67.01
Zm00001d037163_P002 Maize extracellular, plasma membrane 63.59 65.4
Os06t0210100-01 Rice plastid 62.67 65.07
Solyc10g045640.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 64.06 64.95
EES07590 Sorghum endoplasmic reticulum, extracellular, vacuole 60.83 63.77
EER88046 Sorghum endoplasmic reticulum 62.67 63.55
TraesCS6B01G361000.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 61.29 63.03
KRH43057 Soybean extracellular 45.16 62.82
TraesCS6D01G309100.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 60.83 62.56
TraesCS6A01G330200.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 60.83 62.56
Solyc01g104220.2.1 Tomato endoplasmic reticulum 60.83 62.26
Os02t0768200-01 Rice endoplasmic reticulum, plasma membrane, vacuole 62.21 61.93
TraesCS7B01G074300.1 Wheat plasma membrane 61.29 61.57
AT1G21900.1 Thale cress plasma membrane 61.29 61.57
PGSC0003DMT400061146 Potato extracellular 59.45 61.43
KRH10436 Soybean endoplasmic reticulum 60.83 61.4
GSMUA_Achr6P02320_001 Banana endoplasmic reticulum, plasma membrane 60.83 61.11
Zm00001d018194_P001 Maize extracellular 47.0 60.71
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, plasma membrane 60.37 60.65
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, vacuole 58.53 57.99
EER96837 Sorghum extracellular 54.84 57.21
GSMUA_Achr3P20310_001 Banana plasma membrane 56.22 56.48
Zm00001d005857_P001 Maize cytosol, golgi 41.47 55.9
Os09t0453200-00 Rice endoplasmic reticulum, plasma membrane 54.38 55.66
TraesCS5B01G233900.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 53.46 55.5
TraesCS5A01G235500.1 Wheat extracellular, vacuole 52.53 54.29
TraesCS5D01G242600.1 Wheat endoplasmic reticulum 52.53 54.29
AT3G10780.1 Thale cress endoplasmic reticulum, plasma membrane 53.92 53.92
KRH44035 Soybean endoplasmic reticulum, mitochondrion, plasma membrane 59.91 52.85
HORVU5Hr1G067730.1 Barley cytosol, peroxisome 53.0 51.11
Os08t0469400-00 Rice endoplasmic reticulum, extracellular, vacuole 30.88 48.91
HORVU7Hr1G035390.1 Barley mitochondrion, plastid 60.83 48.18
KXG25366 Sorghum plasma membrane 51.61 44.8
AT1G69460.1 Thale cress endoplasmic reticulum, extracellular, vacuole 40.55 41.12
AT1G26690.1 Thale cress endoplasmic reticulum, extracellular, vacuole 40.55 41.12
AT1G14010.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 39.17 40.09
GSMUA_Achr6P10010_001 Banana nucleus, peroxisome, plasma membrane 56.22 38.36
AT2G03290.1 Thale cress extracellular 36.41 37.09
AT3G29070.1 Thale cress mitochondrion 35.48 34.22
AT2G03040.1 Thale cress extracellular 25.81 33.73
Protein Annotations
MapMan:22.3.5.2EntrezGene:837485UniProt:A0A178WDT0EMBL:AC003970ProteinID:AEE28465.1ArrayExpress:AT1G09580
EnsemblPlantsGene:AT1G09580RefSeq:AT1G09580TAIR:AT1G09580RefSeq:AT1G09580-TAIR-GEnsemblPlants:AT1G09580.1TAIR:AT1G09580.1
EMBL:BT010830ncoils:CoilGO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0006810GO:GO:0008150GO:GO:0015031GO:GO:0016020
GO:GO:0016021GO:GO:0016192InterPro:GOLD_domInterPro:IPR009038RefSeq:NP_172429.1ProteinID:OAP16386.1
PFAM:PF01105PO:PO:0000293PFscan:PS50866PANTHER:PTHR22811PANTHER:PTHR22811:SF76UniProt:Q6IDL4
SMART:SM01190SignalP:SignalP-noTMInterPro:TMP21-relatedTMHMM:TMhelixUniParc:UPI0000162CE9:
Description
Transmembrane emp24 domain-containing protein p24delta3 [Source:UniProtKB/Swiss-Prot;Acc:Q6IDL4]
Coordinates
chr1:+:3104492..3106366
Molecular Weight (calculated)
24608.9 Da
IEP (calculated)
6.677
GRAVY (calculated)
-0.080
Length
217 amino acids
Sequence
(BLAST)
001: MKMTAKMRRE FPTAFLLLFL VPVMIPVGEA VWLDVPPTGT KCVSEEIQSN VVVLADYLII SEDHEVMPTI SVKVTSPYGN NLHNMENVTH GQFAFTTQES
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.