Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 7
- golgi 5
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G170400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 83.73 | 90.21 |
| TraesCS7A01G169500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 83.73 | 90.21 |
| Zm00001d037163_P002 | Maize | extracellular, plasma membrane | 87.56 | 86.73 |
| EER88046 | Sorghum | endoplasmic reticulum | 88.52 | 86.45 |
| TraesCS7B01G074300.1 | Wheat | plasma membrane | 87.08 | 84.26 |
| Os02t0768200-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 82.3 | 78.9 |
| KRH48283 | Soybean | cytosol | 26.79 | 72.73 |
| GSMUA_Achr6P02320_001 | Banana | endoplasmic reticulum, plasma membrane | 71.29 | 68.98 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 70.81 | 68.52 |
| KRH59179 | Soybean | endoplasmic reticulum | 66.99 | 66.35 |
| HORVU7Hr1G035390.1 | Barley | mitochondrion, plastid | 86.6 | 66.06 |
| VIT_12s0034g01440.t01 | Wine grape | endoplasmic reticulum, extracellular | 66.51 | 64.35 |
| GSMUA_Achr3P20310_001 | Banana | plasma membrane | 66.03 | 63.89 |
| Solyc10g045640.1.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 64.59 | 63.08 |
| AT1G09580.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 65.07 | 62.67 |
| CDX95293 | Canola | endoplasmic reticulum, extracellular, golgi | 64.59 | 62.5 |
| Bra027911.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 64.11 | 62.04 |
| CDY39938 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 64.11 | 62.04 |
| KRH18772 | Soybean | plasma membrane | 63.64 | 61.86 |
| AT1G21900.1 | Thale cress | plasma membrane | 63.64 | 61.57 |
| CDY31789 | Canola | plasma membrane | 63.16 | 61.4 |
| KRH16308 | Soybean | endoplasmic reticulum | 63.16 | 61.4 |
| AT1G57620.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 62.2 | 61.32 |
| KRH43057 | Soybean | extracellular | 45.45 | 60.9 |
| Os09t0453200-00 | Rice | endoplasmic reticulum, plasma membrane | 61.72 | 60.85 |
| Solyc01g104220.2.1 | Tomato | endoplasmic reticulum | 61.72 | 60.85 |
| Bra020010.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi | 61.72 | 60.85 |
| Bra030786.1-P | Field mustard | extracellular | 61.24 | 60.66 |
| PGSC0003DMT400061146 | Potato | extracellular | 60.77 | 60.48 |
| KRH53215 | Soybean | endoplasmic reticulum | 61.24 | 60.38 |
| VIT_18s0001g03200.t01 | Wine grape | endoplasmic reticulum | 58.37 | 60.1 |
| KRH64707 | Soybean | plasma membrane | 61.72 | 60.0 |
| Bra038147.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 61.72 | 60.0 |
| CDY23801 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 61.24 | 59.53 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 62.2 | 59.36 |
| Solyc11g013000.1.1 | Tomato | plastid | 58.85 | 58.57 |
| PGSC0003DMT400002378 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 58.85 | 58.57 |
| KRH10436 | Soybean | endoplasmic reticulum | 59.81 | 58.14 |
| CDY20688 | Canola | endoplasmic reticulum, golgi, nucleus | 61.72 | 57.59 |
| CDX93498 | Canola | endoplasmic reticulum, golgi, plasma membrane | 61.72 | 57.59 |
| CDY50894 | Canola | endoplasmic reticulum, golgi, plasma membrane | 60.77 | 56.7 |
| CDY31078 | Canola | endoplasmic reticulum | 60.77 | 56.7 |
| CDY04681 | Canola | endoplasmic reticulum | 56.94 | 56.67 |
| KRH44035 | Soybean | endoplasmic reticulum, mitochondrion, plasma membrane | 63.16 | 53.66 |
| PGSC0003DMT400045270 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 54.55 | 53.02 |
| CDX96570 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 58.37 | 52.36 |
| CDY38827 | Canola | endoplasmic reticulum, extracellular, vacuole | 58.37 | 51.26 |
| PGSC0003DMT400045273 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 51.2 | 50.95 |
| Bra016401.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 58.37 | 50.41 |
| Os08t0469400-00 | Rice | endoplasmic reticulum, extracellular, vacuole | 33.01 | 50.37 |
| PGSC0003DMT400045277 | Potato | extracellular | 51.2 | 50.0 |
| Solyc06g060440.1.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 49.76 | 48.83 |
| CDY08168 | Canola | endoplasmic reticulum | 38.28 | 48.48 |
| Solyc06g060450.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 48.8 | 47.44 |
| Solyc06g060430.1.1 | Tomato | cytosol | 20.1 | 45.65 |
| Os07t0632700-01 | Rice | plasma membrane | 45.45 | 41.3 |
| GSMUA_Achr6P10010_001 | Banana | nucleus, peroxisome, plasma membrane | 62.2 | 40.88 |
| Os03t0376000-01 | Rice | endoplasmic reticulum, plasma membrane | 43.06 | 38.79 |
| Bra017957.1-P | Field mustard | endoplasmic reticulum, golgi, vacuole | 40.67 | 27.33 |
| Os03t0328300-01 | Rice | extracellular | 18.66 | 27.27 |
Protein Annotations
| MapMan:22.3.5.2 | EntrezGene:4330850 | EntrezGene:4340456 | EMBL:AK120435 | ProteinID:BAD16929.1 | ProteinID:BAD35699.1 |
| ProteinID:BAF10151.1 | ProteinID:BAS81087.1 | ProteinID:BAS96734.1 | ncoils:Coil | ProteinID:EAZ24747.1 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:GOLD_dom | InterPro:IPR009038 | EnsemblPlantsGene:Os06g0210100 | EnsemblPlants:Os06t0210100-01 | PFAM:PF01105 |
| PFscan:PS50866 | PANTHER:PTHR22811 | PANTHER:PTHR22811:SF68 | UniProt:Q69TX8 | SMART:SM01190 | SignalP:SignalP-noTM |
| InterPro:TMP21-related | TMHMM:TMhelix | UniParc:UPI0000403892 | RefSeq:XP_015625842.1 | RefSeq:XP_015643478.1 | SEG:seg |
Description
Similar to Transmembrane emp24 domain-containing protein 10. (Os06t0210100-01)
Coordinates
chr6:+:5619150..5621697
Molecular Weight (calculated)
22875.7 Da
IEP (calculated)
6.627
GRAVY (calculated)
0.169
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVAAMVVV VALLLGGGAV EAVWLDLPPT GTKCVSEEIQ PNVVVLADYA LMYESHPTAH PTVAVKVTSP YGNTVHHNEN ATTGQFAFTT SEAGNYLACF
101: WLDSPEKGSG VSLNLDWKIG IAAKDWDTVA KKEKIEGVEL ELRKLEAAVE SIHHNLLYLK AREAEMRTVS EKTNSRVAWF SILSLGVCIV VSVLQLWHLQ
201: GFFRKKKLI
101: WLDSPEKGSG VSLNLDWKIG IAAKDWDTVA KKEKIEGVEL ELRKLEAAVE SIHHNLLYLK AREAEMRTVS EKTNSRVAWF SILSLGVCIV VSVLQLWHLQ
201: GFFRKKKLI
001: MKMTAKMRRE FPTAFLLLFL VPVMIPVGEA VWLDVPPTGT KCVSEEIQSN VVVLADYLII SEDHEVMPTI SVKVTSPYGN NLHNMENVTH GQFAFTTQES
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta3 [Source:UniProtKB/Swiss-Prot;Acc:Q6IDL4]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.