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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 7
  • golgi 5
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plasma membrane, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400045273 Potato endoplasmic reticulum, extracellular, plasma membrane 88.26 89.52
Solyc06g060450.2.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 81.69 80.93
Solyc06g060430.1.1 Tomato cytosol 26.29 60.87
Solyc11g013000.1.1 Tomato plastid 57.28 58.1
Solyc01g104220.2.1 Tomato endoplasmic reticulum 54.46 54.72
Solyc10g045640.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 53.05 52.8
KRH53215 Soybean endoplasmic reticulum 52.11 52.36
KRH64707 Soybean plasma membrane 52.58 52.09
TraesCS7A01G169500.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 47.42 52.06
GSMUA_Achr6P02320_001 Banana endoplasmic reticulum, plasma membrane 52.58 51.85
TraesCS7D01G170400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 46.95 51.55
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, plasma membrane 52.11 51.39
Os02t0768200-01 Rice endoplasmic reticulum, plasma membrane, vacuole 51.64 50.46
EES07590 Sorghum endoplasmic reticulum, extracellular, vacuole 48.83 50.24
Zm00001d037163_P002 Maize extracellular, plasma membrane 49.77 50.24
TraesCS6B01G361000.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 49.77 50.24
KRH16308 Soybean endoplasmic reticulum 50.7 50.23
KRH18772 Soybean plasma membrane 50.23 49.77
TraesCS6A01G330200.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 49.3 49.76
TraesCS6D01G309100.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 49.3 49.76
Os06t0210100-01 Rice plastid 48.83 49.76
GSMUA_Achr3P20310_001 Banana plasma membrane 50.23 49.54
VIT_18s0001g03200.t01 Wine grape endoplasmic reticulum 46.95 49.26
EER88046 Sorghum endoplasmic reticulum 49.3 49.07
AT1G21900.1 Thale cress plasma membrane 49.3 48.61
CDY04681 Canola endoplasmic reticulum 47.89 48.57
CDX96570 Canola endoplasmic reticulum, extracellular, plasma membrane 52.11 47.64
TraesCS7B01G074300.1 Wheat plasma membrane 47.89 47.22
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, vacuole 48.36 47.03
Zm00001d018194_P001 Maize extracellular 37.09 47.02
TraesCS5B01G233900.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 45.54 46.41
CDY38827 Canola endoplasmic reticulum, extracellular, vacuole 51.64 46.22
Bra016401.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 52.11 45.87
TraesCS5D01G242600.1 Wheat endoplasmic reticulum 45.07 45.71
TraesCS5A01G235500.1 Wheat extracellular, vacuole 44.6 45.24
Os09t0453200-00 Rice endoplasmic reticulum, plasma membrane 43.66 43.87
EER96837 Sorghum extracellular 42.25 43.27
Zm00001d005857_P001 Maize cytosol, golgi 31.92 42.24
Os08t0469400-00 Rice endoplasmic reticulum, extracellular, vacuole 26.76 41.61
CDY08168 Canola endoplasmic reticulum 31.46 40.61
HORVU5Hr1G067730.1 Barley cytosol, peroxisome 42.72 40.44
HORVU7Hr1G035390.1 Barley mitochondrion, plastid 47.89 37.23
Solyc04g005570.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 36.62 36.28
Solyc01g010940.2.1 Tomato nucleus, plastid 36.62 36.11
Solyc05g013130.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 35.21 35.21
KXG25366 Sorghum plasma membrane 40.38 34.4
GSMUA_Achr6P10010_001 Banana nucleus, peroxisome, plasma membrane 47.89 32.08
Bra017957.1-P Field mustard endoplasmic reticulum, golgi, vacuole 35.21 24.12
Protein Annotations
MapMan:22.3.5.2GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783
GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:GOLD_domInterPro:IPR009038UniProt:K4C6M4
PFAM:PF01105PFscan:PS50866PANTHER:PTHR22811PANTHER:PTHR22811:SF68SMART:SM01190SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc06g060440.1EnsemblPlants:Solyc06g060440.1.1InterPro:TMP21-relatedTMHMM:TMhelixUniParc:UPI0002766160SEG:seg
Description
No Description!
Coordinates
chr6:+:38470049..38472256
Molecular Weight (calculated)
24209.7 Da
IEP (calculated)
8.776
GRAVY (calculated)
0.021
Length
213 amino acids
Sequence
(BLAST)
001: MKLMNVLKLL VVATMAMTAA EAIWLELPSS GAKCVYEEIR NNVVVLVNYA VIVDNEPDKP KFIPDISLKV ISPFGNKLHH EENVTRGKFG FTTTEPGYYM
101: TCFFMNSQAP NGKSVHIGLD WKTGIAAKDW DSIARKEKIQ DIELVLMKFQ AWVQAIHEKI VYLEKREEEM SEVSERTNAA VAVFSGMSLS LCILAAATQI
201: WYLKRFFRKK KLI
Best Arabidopsis Sequence Match ( AT1G57620.1 )
(BLAST)
001: MKKKMIPTTI LLSALIFSLS PICEAVWLTV PHTGSKCVSE EIQSNVIVLA DYLVISEEHS IFPTVSVKVT APYGTVLHHR ENTTNGQFAF TTQESGTYLA
101: CFEADAKSHG NKDFSINIDW KTGIAAKDWD SIARKEKIEG VELEFKKLEG AVEAIHENLI YLRNREAEMR IVSEKTNSRV AWYSIMSLGI CIVVSGLQIL
201: YLKQYFEKKK LI
Arabidopsis Description
CYBTransmembrane emp24 domain-containing protein p24delta4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVU0]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.