Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22908117
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400062438 | Potato | mitochondrion | 97.22 | 97.22 |
| Solyc04g005570.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 75.0 | 75.35 |
| Solyc05g013130.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 71.3 | 72.3 |
| CDY37184 | Canola | endoplasmic reticulum, peroxisome, plastid | 14.81 | 64.0 |
| KRH50555 | Soybean | endoplasmic reticulum | 62.96 | 61.54 |
| VIT_01s0182g00030.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 59.26 | 60.38 |
| KRG89554 | Soybean | endoplasmic reticulum | 60.19 | 59.09 |
| Bra026866.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 57.87 | 58.96 |
| CDY33785 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 57.87 | 58.96 |
| CDY16125 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 57.41 | 58.49 |
| GSMUA_AchrUn_... | Banana | cytosol | 43.98 | 56.21 |
| GSMUA_Achr1P21760_001 | Banana | cytosol | 43.98 | 56.21 |
| AT1G14010.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 55.09 | 56.13 |
| CDX96872 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 54.63 | 55.4 |
| CDY62212 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 54.63 | 55.4 |
| AT1G69460.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 54.17 | 54.67 |
| CDY16181 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 53.7 | 54.21 |
| AT1G26690.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 53.7 | 54.21 |
| Bra024694.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 53.24 | 53.74 |
| CDX85047 | Canola | endoplasmic reticulum | 53.24 | 53.74 |
| AT2G03290.1 | Thale cress | extracellular | 52.31 | 53.05 |
| EER92205 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 52.31 | 52.8 |
| CDY24142 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 52.31 | 52.8 |
| TraesCS2A01G155600.1 | Wheat | golgi | 55.56 | 52.63 |
| CDY61620 | Canola | endoplasmic reticulum | 51.85 | 52.34 |
| Bra016283.1-P | Field mustard | endoplasmic reticulum | 51.85 | 52.34 |
| Os07t0632700-01 | Rice | plasma membrane | 55.56 | 52.17 |
| EER97600 | Sorghum | mitochondrion | 55.09 | 51.97 |
| CDY03005 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 51.39 | 51.87 |
| TraesCS2B01G180800.1 | Wheat | mitochondrion | 54.63 | 51.75 |
| Zm00001d022238_P001 | Maize | mitochondrion | 54.63 | 51.53 |
| CDY45170 | Canola | endoplasmic reticulum, extracellular | 50.93 | 51.4 |
| Bra024781.1-P | Field mustard | endoplasmic reticulum, extracellular | 50.93 | 51.4 |
| Bra026559.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 51.39 | 51.39 |
| TraesCS2D01G161400.1 | Wheat | endoplasmic reticulum, plastid | 54.17 | 51.32 |
| CDY40925 | Canola | endoplasmic reticulum | 50.93 | 51.16 |
| CDX95934 | Canola | vacuole | 50.93 | 51.16 |
| Bra004382.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 50.93 | 51.16 |
| CDY09334 | Canola | endoplasmic reticulum, extracellular, vacuole | 50.93 | 50.93 |
| CDY53680 | Canola | endoplasmic reticulum, extracellular, vacuole | 50.93 | 50.93 |
| HORVU2Hr1G028220.5 | Barley | endoplasmic reticulum, extracellular | 54.63 | 50.86 |
| Zm00001d006951_P001 | Maize | mitochondrion | 53.24 | 50.22 |
| KRH70788 | Soybean | extracellular | 32.87 | 49.65 |
| AT2G03040.1 | Thale cress | extracellular | 37.04 | 48.19 |
| Os03t0376000-01 | Rice | endoplasmic reticulum, plasma membrane | 51.39 | 47.84 |
| KRH70789 | Soybean | cytosol, vacuole | 15.28 | 45.21 |
| Bra016715.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 41.67 | 44.78 |
| Solyc11g013000.1.1 | Tomato | plastid | 37.96 | 39.05 |
| Solyc06g060440.1.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 36.11 | 36.62 |
| Solyc01g104220.2.1 | Tomato | endoplasmic reticulum | 34.26 | 34.91 |
| Solyc06g060450.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 34.72 | 34.88 |
| Solyc10g045640.1.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 34.26 | 34.58 |
| Zm00001d047163_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 39.35 | 34.27 |
| Solyc06g060430.1.1 | Tomato | cytosol | 12.04 | 28.26 |
Protein Annotations
| EnsemblPlants:Solyc01g010940.2.1 | EnsemblPlantsGene:Solyc01g010940.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:GOLD_dom | InterPro:IPR009038 |
| InterPro:TMP21-related | PANTHER:PTHR22811 | PANTHER:PTHR22811:SF47 | PFAM:PF01105 | PFscan:PS50866 | SignalP:SignalP-noTM |
| SMART:SM01190 | TMHMM:TMhelix | UniParc:UPI0002761ED8 | UniProt:K4ATT7 | MapMan:22.3.5.2 | : |
Description
No Description!
Coordinates
chr1:+:6498396..6504024
Molecular Weight (calculated)
24857.0 Da
IEP (calculated)
6.753
GRAVY (calculated)
-0.216
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MMIWRSKTLF LLVILGFFLT QIESLRFELE SGHTKCIAEE IKGHSMTVGK YHIVNTNEGY PLPDTHKVTV RVTSAQGNSH THHYAENVHE GHFSFETAEG
101: ADYHTCFTAA VHKPPVKLTI DFDWKSGVAA KDWTNVAKKA SVEAMELELK HMLEIVQGVH DEMFYLRERE EEMQELNRDT SYKLAWMTGL SILICLSVAG
201: LQMWHLKTFF EKKKLI
101: ADYHTCFTAA VHKPPVKLTI DFDWKSGVAA KDWTNVAKKA SVEAMELELK HMLEIVQGVH DEMFYLRERE EEMQELNRDT SYKLAWMTGL SILICLSVAG
201: LQMWHLKTFF EKKKLI
001: MFLRSLNLCT ILLFLAISSQ VSQSLHFELQ SGRTKCISED IKSNSMTVGK YTVVNPNEAH PSPQSHKISI RVTSSYGNTY HHAEDVESGQ FAFTAVESGD
101: YMACYTAVDH KPEVTLSIDF DWRTGVQSKS WSSVAKKSQV EVMEFDVKRL IETVNSIHEE MFYLREREEE MQNLNRATNS KMAWLSFLSL FVCLGVAGMQ
201: FVHLKTFFEK KKVI
101: YMACYTAVDH KPEVTLSIDF DWRTGVQSKS WSSVAKKSQV EVMEFDVKRL IETVNSIHEE MFYLREREEE MQNLNRATNS KMAWLSFLSL FVCLGVAGMQ
201: FVHLKTFFEK KKVI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQY3]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.