Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 4
- golgi 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG89554 | Soybean | endoplasmic reticulum | 93.21 | 93.64 |
| VIT_01s0182g00030.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 71.04 | 74.06 |
| CDY37184 | Canola | endoplasmic reticulum, peroxisome, plastid | 16.29 | 72.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 53.39 | 69.82 |
| PGSC0003DMT400073002 | Potato | extracellular | 66.97 | 69.48 |
| GSMUA_Achr1P21760_001 | Banana | cytosol | 52.94 | 69.23 |
| Solyc05g013130.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 66.52 | 69.01 |
| PGSC0003DMT400007416 | Potato | endoplasmic reticulum, extracellular, vacuole | 66.06 | 68.22 |
| AT1G26690.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 64.71 | 66.82 |
| Solyc04g005570.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 64.71 | 66.51 |
| CDY33785 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 62.9 | 65.57 |
| Bra026866.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 62.9 | 65.57 |
| CDY16125 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 62.44 | 65.09 |
| AT1G69460.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 62.44 | 64.49 |
| CDX95934 | Canola | vacuole | 62.44 | 64.19 |
| KRH13540 | Soybean | cytosol | 22.62 | 64.1 |
| CDY16181 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 61.99 | 64.02 |
| KRH18453 | Soybean | golgi, plasma membrane, vacuole | 62.44 | 63.89 |
| CDX96872 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 61.54 | 63.85 |
| CDY62212 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 61.54 | 63.85 |
| Bra004382.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 61.99 | 63.72 |
| Bra024694.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 61.54 | 63.55 |
| KRG93569 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 61.99 | 63.43 |
| CDY40925 | Canola | endoplasmic reticulum | 61.54 | 63.26 |
| AT1G14010.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 60.63 | 63.21 |
| PGSC0003DMT400062438 | Potato | mitochondrion | 61.54 | 62.96 |
| Solyc01g010940.2.1 | Tomato | nucleus, plastid | 61.54 | 62.96 |
| KRH70788 | Soybean | extracellular | 40.72 | 62.94 |
| CDX85047 | Canola | endoplasmic reticulum | 60.63 | 62.62 |
| TraesCS2B01G180800.1 | Wheat | mitochondrion | 63.8 | 61.84 |
| TraesCS2A01G155600.1 | Wheat | golgi | 63.8 | 61.84 |
| KRH70789 | Soybean | cytosol, vacuole | 20.36 | 61.64 |
| AT2G03290.1 | Thale cress | extracellular | 59.28 | 61.5 |
| TraesCS2D01G161400.1 | Wheat | endoplasmic reticulum, plastid | 62.9 | 60.96 |
| HORVU2Hr1G028220.5 | Barley | endoplasmic reticulum, extracellular | 62.9 | 59.91 |
| EER92205 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 57.92 | 59.81 |
| CDY24142 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 57.47 | 59.35 |
| Os07t0632700-01 | Rice | plasma membrane | 61.54 | 59.13 |
| Bra016283.1-P | Field mustard | endoplasmic reticulum | 57.01 | 58.88 |
| CDY61620 | Canola | endoplasmic reticulum | 57.01 | 58.88 |
| CDY03005 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 56.56 | 58.41 |
| KRH01218 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 57.47 | 58.26 |
| Os03t0376000-01 | Rice | endoplasmic reticulum, plasma membrane | 61.09 | 58.19 |
| Zm00001d022238_P001 | Maize | mitochondrion | 60.18 | 58.08 |
| EER97600 | Sorghum | mitochondrion | 59.73 | 57.64 |
| Bra024781.1-P | Field mustard | endoplasmic reticulum, extracellular | 55.2 | 57.01 |
| CDY45170 | Canola | endoplasmic reticulum, extracellular | 55.2 | 57.01 |
| CDY53680 | Canola | endoplasmic reticulum, extracellular, vacuole | 55.66 | 56.94 |
| CDY09334 | Canola | endoplasmic reticulum, extracellular, vacuole | 55.66 | 56.94 |
| Bra026559.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 55.66 | 56.94 |
| Zm00001d006951_P001 | Maize | mitochondrion | 58.82 | 56.77 |
| AT2G03040.1 | Thale cress | extracellular | 41.63 | 55.42 |
| Bra016715.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 47.96 | 52.74 |
| KRH48283 | Soybean | cytosol | 16.29 | 46.75 |
| Zm00001d047163_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 47.06 | 41.94 |
| KRH16308 | Soybean | endoplasmic reticulum | 40.27 | 41.4 |
| KRH53215 | Soybean | endoplasmic reticulum | 39.37 | 41.04 |
| KRH18772 | Soybean | plasma membrane | 39.37 | 40.47 |
| KRH64707 | Soybean | plasma membrane | 38.91 | 40.0 |
| KRH59179 | Soybean | endoplasmic reticulum | 38.01 | 39.81 |
| KRH10436 | Soybean | endoplasmic reticulum | 38.01 | 39.07 |
| KRH43057 | Soybean | extracellular | 24.43 | 34.62 |
| KRH44035 | Soybean | endoplasmic reticulum, mitochondrion, plasma membrane | 38.46 | 34.55 |
Protein Annotations
| MapMan:22.3.5.2 | EMBL:ACUP02004705 | ncoils:Coil | EnsemblPlantsGene:GLYMA_07G228100 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:GOLD_dom | UniProt:I1KMF6 | InterPro:IPR009038 | EnsemblPlants:KRH50555 |
| ProteinID:KRH50555 | ProteinID:KRH50555.1 | PFAM:PF01105 | PFscan:PS50866 | PANTHER:PTHR22811 | PANTHER:PTHR22811:SF47 |
| SMART:SM01190 | SignalP:SignalP-noTM | InterPro:TMP21-related | TMHMM:TMhelix | UniParc:UPI0002338680 | SEG:seg |
Description
hypothetical protein
Coordinates
chr7:-:40620076..40623212
Molecular Weight (calculated)
25366.6 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.193
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MIMMMMMGSN TKPLVHLSLL ILVLFSSSTE SLRFELQSGH TKCISEDIKS NSMTVGKYQI VNSNEGQPLP DSHRVTVRVT SSYGNNYHYG DRVQTGHFAF
101: AAVEAGDYMT CFWAVDHNPV ETLTVDFDWK TGVAAKDWSN VAKKGQVDVM ELELKKLQDT VSSIHEEMFY LREREEEMQE LNRTTNSRMF WLSLLSLFVC
201: LSVAGMQLWH LKTFFEKKKL I
101: AAVEAGDYMT CFWAVDHNPV ETLTVDFDWK TGVAAKDWSN VAKKGQVDVM ELELKKLQDT VSSIHEEMFY LREREEEMQE LNRTTNSRMF WLSLLSLFVC
201: LSVAGMQLWH LKTFFEKKKL I
001: MFLRSLNLCT ILLFLAISSQ VSQSLHFELQ SGRTKCISED IKSNSMTVGK YTVVNPNEAH PSPQSHKISI RVTSSYGNTY HHAEDVESGQ FAFTAVESGD
101: YMACYTAVDH KPEVTLSIDF DWRTGVQSKS WSSVAKKSQV EVMEFDVKRL IETVNSIHEE MFYLREREEE MQNLNRATNS KMAWLSFLSL FVCLGVAGMQ
201: FVHLKTFFEK KKVI
101: YMACYTAVDH KPEVTLSIDF DWRTGVQSKS WSSVAKKSQV EVMEFDVKRL IETVNSIHEE MFYLREREEE MQNLNRATNS KMAWLSFLSL FVCLGVAGMQ
201: FVHLKTFFEK KKVI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQY3]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.