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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 6
  • golgi 5
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH43057 Soybean extracellular 66.82 90.38
KRH48283 Soybean cytosol 32.23 88.31
VIT_12s0034g01440.t01 Wine grape endoplasmic reticulum, extracellular 76.3 74.54
TraesCS7D01G170400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 64.93 70.62
TraesCS7A01G169500.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 64.45 70.1
GSMUA_Achr6P02320_001 Banana endoplasmic reticulum, plasma membrane 69.67 68.06
Zm00001d037163_P002 Maize extracellular, plasma membrane 67.3 67.3
Solyc10g045640.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 68.25 67.29
Os06t0210100-01 Rice plastid 66.35 66.99
Solyc01g104220.2.1 Tomato endoplasmic reticulum 67.3 66.98
EER88046 Sorghum endoplasmic reticulum 67.3 66.36
Bra030786.1-P Field mustard extracellular 66.35 66.35
AT1G09580.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 67.77 65.9
PGSC0003DMT400061146 Potato extracellular 65.4 65.71
EES07590 Sorghum endoplasmic reticulum, extracellular, vacuole 64.45 65.7
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, plasma membrane 66.82 65.28
CDY31789 Canola plasma membrane 66.35 65.12
CDY39938 Canola endoplasmic reticulum, extracellular, plasma membrane 66.35 64.81
Bra027911.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 66.35 64.81
Os02t0768200-01 Rice endoplasmic reticulum, plasma membrane, vacuole 66.82 64.68
TraesCS7B01G074300.1 Wheat plasma membrane 65.88 64.35
KRH10436 Soybean endoplasmic reticulum 65.4 64.19
TraesCS6B01G361000.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 63.98 63.98
TraesCS6A01G330200.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 63.98 63.98
CDX95293 Canola endoplasmic reticulum, extracellular, golgi 65.4 63.89
Bra038147.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 64.93 63.72
KRH53215 Soybean endoplasmic reticulum 63.98 63.68
AT1G57620.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 63.98 63.68
TraesCS6D01G309100.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 63.51 63.51
CDY23801 Canola endoplasmic reticulum, extracellular, plasma membrane 64.45 63.26
Bra020010.1-P Field mustard endoplasmic reticulum, extracellular, golgi 63.51 63.21
KRH18772 Soybean plasma membrane 63.98 62.79
CDY20688 Canola endoplasmic reticulum, golgi, nucleus 66.35 62.5
CDY31078 Canola endoplasmic reticulum 66.35 62.5
KRH64707 Soybean plasma membrane 63.51 62.33
Zm00001d018194_P001 Maize extracellular 49.29 61.9
KRH16308 Soybean endoplasmic reticulum 63.03 61.86
CDY50894 Canola endoplasmic reticulum, golgi, plasma membrane 63.98 60.27
GSMUA_Achr3P20310_001 Banana plasma membrane 61.61 60.19
CDX93498 Canola endoplasmic reticulum, golgi, plasma membrane 63.51 59.82
Zm00001d005857_P001 Maize cytosol, golgi 45.5 59.63
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, vacuole 61.61 59.36
EER96837 Sorghum extracellular 57.35 58.17
KRH44035 Soybean endoplasmic reticulum, mitochondrion, plasma membrane 67.77 58.13
Os09t0453200-00 Rice endoplasmic reticulum, plasma membrane 55.92 55.66
TraesCS5D01G242600.1 Wheat endoplasmic reticulum 54.5 54.76
TraesCS5B01G233900.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 54.03 54.55
TraesCS5A01G235500.1 Wheat extracellular, vacuole 54.03 54.29
HORVU7Hr1G035390.1 Barley mitochondrion, plastid 65.4 50.37
HORVU5Hr1G067730.1 Barley cytosol, peroxisome 53.08 49.78
KXG25366 Sorghum plasma membrane 52.13 44.0
Os08t0469400-00 Rice endoplasmic reticulum, extracellular, vacuole 28.44 43.8
GSMUA_Achr6P10010_001 Banana nucleus, peroxisome, plasma membrane 61.61 40.88
KRH13540 Soybean cytosol 14.22 38.46
KRH50555 Soybean endoplasmic reticulum 39.81 38.01
KRH18453 Soybean golgi, plasma membrane, vacuole 38.39 37.5
KRH01218 Soybean endoplasmic reticulum, plasma membrane, vacuole 38.39 37.16
KRH70789 Soybean cytosol, vacuole 12.8 36.99
KRG93569 Soybean endoplasmic reticulum, extracellular, plasma membrane 37.44 36.57
KRG89554 Soybean endoplasmic reticulum 37.91 36.36
KRH70788 Soybean extracellular 21.33 31.47
Protein Annotations
EntrezGene:100817357MapMan:22.3.5.2EMBL:ACUP02003303ncoils:CoilEnsemblPlantsGene:GLYMA_05G169500GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021InterPro:GOLD_domUniProt:I1K4B2InterPro:IPR009038
EnsemblPlants:KRH59179ProteinID:KRH59179ProteinID:KRH59179.1PFAM:PF01105PFscan:PS50866PANTHER:PTHR22811
PANTHER:PTHR22811:SF68SMART:SM01190SignalP:SignalP-noTMInterPro:TMP21-relatedTMHMM:TMhelixUniParc:UPI0002339CA4
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr5:+:35993890..35997691
Molecular Weight (calculated)
23778.8 Da
IEP (calculated)
8.106
GRAVY (calculated)
-0.016
Length
211 amino acids
Sequence
(BLAST)
001: MGNRAMLTLL LFFFSTKLFP SALAIWLSLP TTGTKCVSEE IQHNIVVLAD YVVIPSDHTH NPTIAVKVTS PYGNNLHHKE NTTHGNIAFT TQEAGNYLAC
101: FWVDSHSQGV VEVNVNLDWK IGIAAKDWDS VARKEKIEGV ELELRKLEGA VEAIHENLLY LKGREADMRT VSEKTNGRVA WFSIMSLAMC IAVSGLQLWY
201: LKRYFQKKKL I
Best Arabidopsis Sequence Match ( AT1G09580.1 )
(BLAST)
001: MKMTAKMRRE FPTAFLLLFL VPVMIPVGEA VWLDVPPTGT KCVSEEIQSN VVVLADYLII SEDHEVMPTI SVKVTSPYGN NLHNMENVTH GQFAFTTQES
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta3 [Source:UniProtKB/Swiss-Prot;Acc:Q6IDL4]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.