Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g104220.2.1 | Tomato | endoplasmic reticulum | 95.24 | 94.34 |
| VIT_12s0034g01440.t01 | Wine grape | endoplasmic reticulum, extracellular | 70.48 | 68.52 |
| KRH48283 | Soybean | cytosol | 24.29 | 66.23 |
| KRH59179 | Soybean | endoplasmic reticulum | 65.71 | 65.4 |
| TraesCS7D01G170400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 58.1 | 62.89 |
| PGSC0003DMT400002378 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 62.86 | 62.86 |
| TraesCS7A01G169500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 57.62 | 62.37 |
| KRH43057 | Soybean | extracellular | 45.24 | 60.9 |
| Os06t0210100-01 | Rice | plastid | 60.48 | 60.77 |
| GSMUA_Achr6P02320_001 | Banana | endoplasmic reticulum, plasma membrane | 62.38 | 60.65 |
| EES07590 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 59.05 | 59.9 |
| AT1G09580.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 61.43 | 59.45 |
| Zm00001d037163_P002 | Maize | extracellular, plasma membrane | 59.52 | 59.24 |
| Bra030786.1-P | Field mustard | extracellular | 59.52 | 59.24 |
| AT1G57620.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 59.52 | 58.96 |
| EER88046 | Sorghum | endoplasmic reticulum | 60.0 | 58.88 |
| CDY39938 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 60.48 | 58.8 |
| Bra027911.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 60.48 | 58.8 |
| CDX95293 | Canola | endoplasmic reticulum, extracellular, golgi | 60.48 | 58.8 |
| Bra038147.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 60.0 | 58.6 |
| CDY31789 | Canola | plasma membrane | 60.0 | 58.6 |
| CDY23801 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 60.0 | 58.6 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 60.0 | 58.33 |
| KRH10436 | Soybean | endoplasmic reticulum | 59.52 | 58.14 |
| TraesCS6A01G330200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 58.1 | 57.82 |
| TraesCS6B01G361000.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 58.1 | 57.82 |
| TraesCS6D01G309100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 58.1 | 57.82 |
| Os02t0768200-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 60.0 | 57.8 |
| TraesCS7B01G074300.1 | Wheat | plasma membrane | 59.05 | 57.41 |
| PGSC0003DMT400045273 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 57.14 | 57.14 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 59.05 | 56.62 |
| Zm00001d018194_P001 | Maize | extracellular | 45.24 | 56.55 |
| CDY31078 | Canola | endoplasmic reticulum | 60.0 | 56.25 |
| Bra020010.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi | 56.67 | 56.13 |
| CDY20688 | Canola | endoplasmic reticulum, golgi, nucleus | 59.52 | 55.8 |
| GSMUA_Achr3P20310_001 | Banana | plasma membrane | 57.14 | 55.56 |
| Zm00001d005857_P001 | Maize | cytosol, golgi | 41.9 | 54.66 |
| PGSC0003DMT400045277 | Potato | extracellular | 55.24 | 54.21 |
| PGSC0003DMT400045270 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 55.24 | 53.95 |
| CDX93498 | Canola | endoplasmic reticulum, golgi, plasma membrane | 56.67 | 53.12 |
| EER96837 | Sorghum | extracellular | 52.38 | 52.88 |
| KRH44035 | Soybean | endoplasmic reticulum, mitochondrion, plasma membrane | 61.9 | 52.85 |
| TraesCS5A01G235500.1 | Wheat | extracellular, vacuole | 52.38 | 52.38 |
| CDY50894 | Canola | endoplasmic reticulum, golgi, plasma membrane | 55.71 | 52.23 |
| TraesCS5B01G233900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 51.9 | 52.15 |
| TraesCS5D01G242600.1 | Wheat | endoplasmic reticulum | 51.9 | 51.9 |
| Os09t0453200-00 | Rice | endoplasmic reticulum, plasma membrane | 50.95 | 50.47 |
| HORVU5Hr1G067730.1 | Barley | cytosol, peroxisome | 51.9 | 48.44 |
| HORVU7Hr1G035390.1 | Barley | mitochondrion, plastid | 59.52 | 45.62 |
| Os08t0469400-00 | Rice | endoplasmic reticulum, extracellular, vacuole | 28.57 | 43.8 |
| GSMUA_Achr6P10010_001 | Banana | nucleus, peroxisome, plasma membrane | 60.0 | 39.62 |
| KXG25366 | Sorghum | plasma membrane | 46.67 | 39.2 |
| PGSC0003DMT400007416 | Potato | endoplasmic reticulum, extracellular, vacuole | 37.14 | 36.45 |
| PGSC0003DMT400073002 | Potato | extracellular | 34.29 | 33.8 |
| PGSC0003DMT400062438 | Potato | mitochondrion | 33.33 | 32.41 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400061146 | EnsemblPlantsGene:PGSC0003DMG400023791 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:GOLD_dom |
| InterPro:IPR009038 | InterPro:TMP21-related | ncoils:Coil | PANTHER:PTHR22811 | PANTHER:PTHR22811:SF76 | PFAM:PF01105 |
| PFscan:PS50866 | PGSC:PGSC0003DMG400023791 | SignalP:SignalP-noTM | SMART:SM01190 | TMHMM:TMhelix | UniParc:UPI000296C50C |
| UniProt:M1C746 | MapMan:22.3.5.2 | : | : | : | : |
Description
Transmembrane emp24 domain-containing protein 10 [Source:PGSC_GENE;Acc:PGSC0003DMG400023791]
Coordinates
chr1:+:80881581..80886427
Molecular Weight (calculated)
23497.4 Da
IEP (calculated)
7.235
GRAVY (calculated)
-0.045
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDMSRWIFL MVLCLLHKGQ AIWLTVPPIG TKCVSEELHN NVVVLADYYA LPDDHTHPSP TISIKVTSPF GNTLHHNENT THGQFAFTTT EAGNYLACFW
101: VEDGHNPGGK SLNVGLDWKT GIAAKDWESV ARKEKIEGIE LELRKLEGAV EAIRENLIYL KTREAEMRAV SEITNTRVAS FSLASLGVCV LAAVLQILYL
201: KRYFQKKKLI
101: VEDGHNPGGK SLNVGLDWKT GIAAKDWESV ARKEKIEGIE LELRKLEGAV EAIRENLIYL KTREAEMRAV SEITNTRVAS FSLASLGVCV LAAVLQILYL
201: KRYFQKKKLI
001: MKMTAKMRRE FPTAFLLLFL VPVMIPVGEA VWLDVPPTGT KCVSEEIQSN VVVLADYLII SEDHEVMPTI SVKVTSPYGN NLHNMENVTH GQFAFTTQES
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta3 [Source:UniProtKB/Swiss-Prot;Acc:Q6IDL4]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.