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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • endoplasmic reticulum 4
  • extracellular 3
  • vacuole 3
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi, plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra020010.1-P Field mustard endoplasmic reticulum, extracellular, golgi 94.64 100.0
CDY50894 Canola endoplasmic reticulum, golgi, plasma membrane 95.98 95.98
CDY31078 Canola endoplasmic reticulum 80.36 80.36
AT1G09580.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 77.23 79.72
CDY20688 Canola endoplasmic reticulum, golgi, nucleus 78.57 78.57
KRH48283 Soybean cytosol 24.55 71.43
CDY31789 Canola plasma membrane 66.52 69.3
CDY23801 Canola endoplasmic reticulum, extracellular, plasma membrane 65.18 67.91
CDX95293 Canola endoplasmic reticulum, extracellular, golgi 64.73 67.13
CDY39938 Canola endoplasmic reticulum, extracellular, plasma membrane 64.73 67.13
KRH59179 Soybean endoplasmic reticulum 59.82 63.51
TraesCS7D01G170400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 54.46 62.89
TraesCS7A01G169500.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 54.46 62.89
EES07590 Sorghum endoplasmic reticulum, extracellular, vacuole 57.14 61.84
Os06t0210100-01 Rice plastid 57.59 61.72
Zm00001d037163_P002 Maize extracellular, plasma membrane 58.04 61.61
VIT_12s0034g01440.t01 Wine grape endoplasmic reticulum, extracellular 59.38 61.57
TraesCS6B01G361000.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 57.14 60.66
TraesCS6A01G330200.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 56.7 60.19
TraesCS6D01G309100.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 56.7 60.19
EER88046 Sorghum endoplasmic reticulum 57.14 59.81
GSMUA_Achr6P02320_001 Banana endoplasmic reticulum, plasma membrane 57.59 59.72
Solyc10g045640.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 56.7 59.35
Os02t0768200-01 Rice endoplasmic reticulum, plasma membrane, vacuole 57.59 59.17
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, plasma membrane 56.7 58.8
TraesCS7B01G074300.1 Wheat plasma membrane 56.25 58.33
Zm00001d018194_P001 Maize extracellular 43.75 58.33
KRH43057 Soybean extracellular 40.18 57.69
Solyc01g104220.2.1 Tomato endoplasmic reticulum 54.02 57.08
KRH10436 Soybean endoplasmic reticulum 54.46 56.74
PGSC0003DMT400061146 Potato extracellular 53.12 56.67
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, vacuole 55.36 56.62
CDY04681 Canola endoplasmic reticulum 52.23 55.71
GSMUA_Achr3P20310_001 Banana plasma membrane 53.12 55.09
TraesCS5B01G233900.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 51.34 55.02
EER96837 Sorghum extracellular 50.89 54.81
TraesCS5D01G242600.1 Wheat endoplasmic reticulum 50.45 53.81
TraesCS5A01G235500.1 Wheat extracellular, vacuole 50.45 53.81
Zm00001d005857_P001 Maize cytosol, golgi 38.39 53.42
CDX96570 Canola endoplasmic reticulum, extracellular, plasma membrane 54.02 51.93
Os09t0453200-00 Rice endoplasmic reticulum, plasma membrane 49.11 51.89
Os08t0469400-00 Rice endoplasmic reticulum, extracellular, vacuole 31.25 51.09
CDY38827 Canola endoplasmic reticulum, extracellular, vacuole 53.12 50.0
CDY37184 Canola endoplasmic reticulum, peroxisome, plastid 11.16 50.0
HORVU5Hr1G067730.1 Barley cytosol, peroxisome 50.0 49.78
KRH44035 Soybean endoplasmic reticulum, mitochondrion, plasma membrane 54.02 49.19
CDY08168 Canola endoplasmic reticulum 34.38 46.67
HORVU7Hr1G035390.1 Barley mitochondrion, plastid 56.7 46.35
CDY36275 Canola endoplasmic reticulum, extracellular, plasma membrane 40.18 45.69
CDX73906 Canola endoplasmic reticulum, extracellular, plasma membrane 42.41 45.67
CDX73903 Canola endoplasmic reticulum, extracellular, plasma membrane 42.41 45.67
CDY00701 Canola plasma membrane 41.07 44.23
CDY08577 Canola plasma membrane 41.07 43.81
CDY00971 Canola plasma membrane 41.07 43.81
KXG25366 Sorghum plasma membrane 46.88 42.0
CDY16125 Canola endoplasmic reticulum, extracellular, plasma membrane 36.16 38.21
GSMUA_Achr6P10010_001 Banana nucleus, peroxisome, plasma membrane 54.02 38.05
CDY00102 Canola cytosol 28.57 37.87
CDY33785 Canola endoplasmic reticulum, extracellular, plasma membrane 35.27 37.26
CDX96872 Canola endoplasmic reticulum, extracellular, plasma membrane 35.27 37.09
CDY62212 Canola endoplasmic reticulum, extracellular, plasma membrane 35.27 37.09
CDY16181 Canola endoplasmic reticulum, plasma membrane, vacuole 35.27 36.92
CDX95934 Canola vacuole 35.27 36.74
CDX85047 Canola endoplasmic reticulum 34.82 36.45
CDY40925 Canola endoplasmic reticulum 34.38 35.81
CDY19998 Canola endoplasmic reticulum, extracellular 33.48 34.72
CDX85243 Canola mitochondrion 33.48 33.78
CDY45170 Canola endoplasmic reticulum, extracellular 32.14 33.64
CDY03005 Canola endoplasmic reticulum, extracellular, plasma membrane 32.14 33.64
CDY44411 Canola golgi, plasma membrane, plastid 32.59 32.88
CDY09334 Canola endoplasmic reticulum, extracellular, vacuole 31.7 32.87
CDY04053 Canola endoplasmic reticulum 32.59 32.74
CDY61620 Canola endoplasmic reticulum 31.25 32.71
CDY53680 Canola endoplasmic reticulum, extracellular, vacuole 31.25 32.41
CDY24142 Canola endoplasmic reticulum, plasma membrane, vacuole 30.8 32.24
Protein Annotations
MapMan:22.3.5.2GO:A0A078E1R8EnsemblPlants:CDX93498ProteinID:CDX93498ProteinID:CDX93498.1ncoils:Coil
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021InterPro:GOLD_domEnsemblPlantsGene:GSBRNA2T00156167001InterPro:IPR009038PFAM:PF01105
PFscan:PS50866PANTHER:PTHR22811PANTHER:PTHR22811:SF76SMART:SM01190SignalP:SignalP-TMInterPro:TMP21-related
TMHMM:TMhelixUniParc:UPI0004EF3579::::
Description
BnaA06g05500D
Coordinates
chrLK031876:-:431520..432971
Molecular Weight (calculated)
24855.3 Da
IEP (calculated)
8.057
GRAVY (calculated)
0.054
Length
224 amino acids
Sequence
(BLAST)
001: MNTMGVFVSS LKMAAKKIQH GLLTAFLLLI LVPVGEAVWL DVPTTGTKCV SEEIQSNVVV LADYIIISED DSLLPTISVK VTSPYGKNLH QMENVTVGEF
101: AFTTQESGNY MACFTADTKS HGNKNVSISV DWKTGIAAKD WKNIAKKEKI EGVELEIRKL EAAVEAIHEN LVYIRNKEAD MRTVSEKTNS RVAWFSTMSM
201: GICIAVSGIQ VVYLKQYFQK KKLI
Best Arabidopsis Sequence Match ( AT1G09580.1 )
(BLAST)
001: MKMTAKMRRE FPTAFLLLFL VPVMIPVGEA VWLDVPPTGT KCVSEEIQSN VVVLADYLII SEDHEVMPTI SVKVTSPYGN NLHNMENVTH GQFAFTTQES
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta3 [Source:UniProtKB/Swiss-Prot;Acc:Q6IDL4]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.