Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH48283 | Soybean | cytosol | 27.78 | 77.92 |
| KRH59179 | Soybean | endoplasmic reticulum | 74.54 | 76.3 |
| TraesCS7A01G169500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 65.28 | 72.68 |
| Solyc10g045640.1.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 71.3 | 71.96 |
| TraesCS7D01G170400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 63.89 | 71.13 |
| KRH43057 | Soybean | extracellular | 50.93 | 70.51 |
| PGSC0003DMT400061146 | Potato | extracellular | 68.52 | 70.48 |
| GSMUA_Achr6P02320_001 | Banana | endoplasmic reticulum, plasma membrane | 70.37 | 70.37 |
| Solyc01g104220.2.1 | Tomato | endoplasmic reticulum | 68.98 | 70.28 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 68.98 | 68.98 |
| AT1G09580.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 68.52 | 68.2 |
| Zm00001d037163_P002 | Maize | extracellular, plasma membrane | 66.2 | 67.77 |
| EER88046 | Sorghum | endoplasmic reticulum | 67.13 | 67.76 |
| CDY39938 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 67.59 | 67.59 |
| CDX95293 | Canola | endoplasmic reticulum, extracellular, golgi | 67.59 | 67.59 |
| Bra027911.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 67.59 | 67.59 |
| Os06t0210100-01 | Rice | plastid | 64.35 | 66.51 |
| EES07590 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 63.43 | 66.18 |
| CDY31789 | Canola | plasma membrane | 65.74 | 66.05 |
| KRH10436 | Soybean | endoplasmic reticulum | 65.74 | 66.05 |
| Bra038147.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 65.28 | 65.58 |
| CDY23801 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 64.81 | 65.12 |
| Bra030786.1-P | Field mustard | extracellular | 63.43 | 64.93 |
| AT1G57620.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 63.43 | 64.62 |
| TraesCS6D01G309100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 62.96 | 64.45 |
| TraesCS6B01G361000.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 62.96 | 64.45 |
| GSMUA_Achr3P20310_001 | Banana | plasma membrane | 64.35 | 64.35 |
| Os02t0768200-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 64.81 | 64.22 |
| TraesCS6A01G330200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 62.5 | 63.98 |
| TraesCS7B01G074300.1 | Wheat | plasma membrane | 63.89 | 63.89 |
| Bra020010.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi | 61.11 | 62.26 |
| Zm00001d005857_P001 | Maize | cytosol, golgi | 46.3 | 62.11 |
| VIT_18s0001g03200.t01 | Wine grape | endoplasmic reticulum | 58.33 | 62.07 |
| CDY31078 | Canola | endoplasmic reticulum | 63.89 | 61.61 |
| CDY20688 | Canola | endoplasmic reticulum, golgi, nucleus | 63.89 | 61.61 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 62.04 | 61.19 |
| Zm00001d018194_P001 | Maize | extracellular | 47.22 | 60.71 |
| EER96837 | Sorghum | extracellular | 58.33 | 60.58 |
| CDY50894 | Canola | endoplasmic reticulum, golgi, plasma membrane | 62.5 | 60.27 |
| CDX93498 | Canola | endoplasmic reticulum, golgi, plasma membrane | 61.57 | 59.38 |
| Os09t0453200-00 | Rice | endoplasmic reticulum, plasma membrane | 57.87 | 58.96 |
| KRH44035 | Soybean | endoplasmic reticulum, mitochondrion, plasma membrane | 67.13 | 58.94 |
| TraesCS5B01G233900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 56.48 | 58.37 |
| TraesCS5A01G235500.1 | Wheat | extracellular, vacuole | 56.02 | 57.62 |
| TraesCS5D01G242600.1 | Wheat | endoplasmic reticulum | 55.56 | 57.14 |
| HORVU5Hr1G067730.1 | Barley | cytosol, peroxisome | 55.09 | 52.89 |
| HORVU7Hr1G035390.1 | Barley | mitochondrion, plastid | 63.89 | 50.37 |
| Os08t0469400-00 | Rice | endoplasmic reticulum, extracellular, vacuole | 29.63 | 46.72 |
| VIT_01s0182g00030.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 42.59 | 43.4 |
| KXG25366 | Sorghum | plasma membrane | 49.54 | 42.8 |
| GSMUA_Achr6P10010_001 | Banana | nucleus, peroxisome, plasma membrane | 62.04 | 42.14 |
| VIT_14s0108g01140.t01 | Wine grape | extracellular | 40.28 | 41.43 |
Protein Annotations
| EntrezGene:100256716 | wikigene:100256716 | MapMan:22.3.5.2 | EMBL:AM432265 | ProteinID:CAN82472 | ProteinID:CAN82472.1 |
| ProteinID:CCB48709 | ProteinID:CCB48709.1 | ncoils:Coil | UniProt:F6H957 | EMBL:FN595497 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:GOLD_dom | InterPro:IPR009038 | EntrezGene:LOC100256716 | wikigene:LOC100256716 | PFAM:PF01105 |
| PFscan:PS50866 | PANTHER:PTHR22811 | PANTHER:PTHR22811:SF76 | SMART:SM01190 | SignalP:SignalP-noTM | TIGR:TC54700 |
| InterPro:TMP21-related | TMHMM:TMhelix | UniParc:UPI0001984561 | ArrayExpress:VIT_12s0034g01440 | EnsemblPlantsGene:VIT_12s0034g01440 | EnsemblPlants:VIT_12s0034g01440.t01 |
| unigene:Vvi.15063 | RefSeq:XP_002272994 | RefSeq:XP_002272994.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr12:-:17468796..17478842
Molecular Weight (calculated)
24094.2 Da
IEP (calculated)
7.235
GRAVY (calculated)
-0.023
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MKMNGSGLVL RLLLLLCISD LLIPMSQAIW LSIPSSGTKC VSEEIQNNVV VLADYLVIPD DHTHSSPTIS IKVTSPYGNN LHHKENVTHG QFAFTTSEAG
101: NYLACFWVDG HNQGGGDVSV NLDWKTGIGA KDWESVARKE KIEGVELELR KLEGAVEAIH ENLLYLKSRE AEMRMVSEKT NARVAWYSIM SLGVCIAVSA
201: LQLWHLKRFF QKKKLI
101: NYLACFWVDG HNQGGGDVSV NLDWKTGIGA KDWESVARKE KIEGVELELR KLEGAVEAIH ENLLYLKSRE AEMRMVSEKT NARVAWYSIM SLGVCIAVSA
201: LQLWHLKRFF QKKKLI
001: MKMTAKMRRE FPTAFLLLFL VPVMIPVGEA VWLDVPPTGT KCVSEEIQSN VVVLADYLII SEDHEVMPTI SVKVTSPYGN NLHNMENVTH GQFAFTTQES
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta3 [Source:UniProtKB/Swiss-Prot;Acc:Q6IDL4]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.