Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39938 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 81.6 | 80.09 |
| CDX95293 | Canola | endoplasmic reticulum, extracellular, golgi | 81.6 | 80.09 |
| Bra027911.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 81.6 | 80.09 |
| CDY31789 | Canola | plasma membrane | 80.66 | 79.53 |
| CDY23801 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 80.19 | 79.07 |
| Bra038147.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 79.72 | 78.6 |
| AT1G09580.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 74.53 | 72.81 |
| KRH48283 | Soybean | cytosol | 26.42 | 72.73 |
| TraesCS7A01G169500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 59.43 | 64.95 |
| TraesCS7D01G170400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 59.43 | 64.95 |
| KRH59179 | Soybean | endoplasmic reticulum | 63.68 | 63.98 |
| VIT_12s0034g01440.t01 | Wine grape | endoplasmic reticulum, extracellular | 64.62 | 63.43 |
| Solyc10g045640.1.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 63.21 | 62.62 |
| Os06t0210100-01 | Rice | plastid | 61.32 | 62.2 |
| Solyc01g104220.2.1 | Tomato | endoplasmic reticulum | 60.85 | 60.85 |
| EES07590 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 58.96 | 60.39 |
| EER88046 | Sorghum | endoplasmic reticulum | 60.85 | 60.28 |
| Zm00001d037163_P002 | Maize | extracellular, plasma membrane | 59.91 | 60.19 |
| AT1G21900.1 | Thale cress | plasma membrane | 60.85 | 59.72 |
| GSMUA_Achr6P02320_001 | Banana | endoplasmic reticulum, plasma membrane | 60.85 | 59.72 |
| PGSC0003DMT400061146 | Potato | extracellular | 58.96 | 59.52 |
| TraesCS6D01G309100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 58.96 | 59.24 |
| TraesCS6A01G330200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 58.96 | 59.24 |
| TraesCS6B01G361000.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 58.96 | 59.24 |
| Os02t0768200-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 60.85 | 59.17 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 59.91 | 58.8 |
| KRH43057 | Soybean | extracellular | 42.92 | 58.33 |
| TraesCS7B01G074300.1 | Wheat | plasma membrane | 58.96 | 57.87 |
| KRH10436 | Soybean | endoplasmic reticulum | 58.02 | 57.21 |
| Zm00001d018194_P001 | Maize | extracellular | 44.81 | 56.55 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 58.02 | 56.16 |
| GSMUA_Achr3P20310_001 | Banana | plasma membrane | 55.19 | 54.17 |
| Os09t0453200-00 | Rice | endoplasmic reticulum, plasma membrane | 53.3 | 53.3 |
| Zm00001d005857_P001 | Maize | cytosol, golgi | 40.09 | 52.8 |
| EER96837 | Sorghum | extracellular | 50.94 | 51.92 |
| TraesCS5B01G233900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 50.94 | 51.67 |
| TraesCS5A01G235500.1 | Wheat | extracellular, vacuole | 50.94 | 51.43 |
| TraesCS5D01G242600.1 | Wheat | endoplasmic reticulum | 50.94 | 51.43 |
| KRH44035 | Soybean | endoplasmic reticulum, mitochondrion, plasma membrane | 59.43 | 51.22 |
| AT3G10780.1 | Thale cress | endoplasmic reticulum, plasma membrane | 50.47 | 49.31 |
| HORVU5Hr1G067730.1 | Barley | cytosol, peroxisome | 50.94 | 48.0 |
| HORVU7Hr1G035390.1 | Barley | mitochondrion, plastid | 58.96 | 45.62 |
| Os08t0469400-00 | Rice | endoplasmic reticulum, extracellular, vacuole | 28.77 | 44.53 |
| KXG25366 | Sorghum | plasma membrane | 50.94 | 43.2 |
| AT1G14010.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 38.68 | 38.68 |
| AT1G69460.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 38.21 | 37.85 |
| AT1G26690.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 38.21 | 37.85 |
| GSMUA_Achr6P10010_001 | Banana | nucleus, peroxisome, plasma membrane | 55.66 | 37.11 |
| AT2G03290.1 | Thale cress | extracellular | 35.38 | 35.21 |
| AT3G29070.1 | Thale cress | mitochondrion | 33.02 | 31.11 |
| AT2G03040.1 | Thale cress | extracellular | 24.06 | 30.72 |
Protein Annotations
| MapMan:22.3.5.2 | EntrezGene:842138 | ProteinID:AAG50754.1 | ProteinID:AEE33445.1 | EMBL:AK117498 | ArrayExpress:AT1G57620 |
| EnsemblPlantsGene:AT1G57620 | RefSeq:AT1G57620 | TAIR:AT1G57620 | RefSeq:AT1G57620-TAIR-G | EnsemblPlants:AT1G57620.1 | TAIR:AT1G57620.1 |
| EMBL:AY085744 | Unigene:At.36998 | EMBL:BT005172 | ncoils:Coil | GO:GO:0000139 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016192 | InterPro:GOLD_dom | InterPro:IPR009038 | RefSeq:NP_176075.1 | PFAM:PF01105 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50866 |
| PANTHER:PTHR22811 | PANTHER:PTHR22811:SF76 | UniProt:Q9FVU0 | SMART:SM01190 | SignalP:SignalP-noTM | InterPro:TMP21-related |
| TMHMM:TMhelix | UniParc:UPI000000C56B | : | : | : | : |
Description
CYBTransmembrane emp24 domain-containing protein p24delta4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVU0]
Coordinates
chr1:+:21342627..21344804
Molecular Weight (calculated)
23889.9 Da
IEP (calculated)
7.112
GRAVY (calculated)
-0.006
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKKMIPTTI LLSALIFSLS PICEAVWLTV PHTGSKCVSE EIQSNVIVLA DYLVISEEHS IFPTVSVKVT APYGTVLHHR ENTTNGQFAF TTQESGTYLA
101: CFEADAKSHG NKDFSINIDW KTGIAAKDWD SIARKEKIEG VELEFKKLEG AVEAIHENLI YLRNREAEMR IVSEKTNSRV AWYSIMSLGI CIVVSGLQIL
201: YLKQYFEKKK LI
101: CFEADAKSHG NKDFSINIDW KTGIAAKDWD SIARKEKIEG VELEFKKLEG AVEAIHENLI YLRNREAEMR IVSEKTNSRV AWYSIMSLGI CIVVSGLQIL
201: YLKQYFEKKK LI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.