Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 5
- vacuole 4
- plasma membrane 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04681 | Canola | endoplasmic reticulum | 81.94 | 84.29 |
| CDX96570 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 80.56 | 74.68 |
| CDY38827 | Canola | endoplasmic reticulum, extracellular, vacuole | 80.09 | 72.69 |
| Bra016401.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 80.56 | 71.9 |
| CDY08168 | Canola | endoplasmic reticulum | 53.7 | 70.3 |
| TraesCS7D01G170400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 59.26 | 65.98 |
| TraesCS7A01G169500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 58.8 | 65.46 |
| Os06t0210100-01 | Rice | plastid | 61.57 | 63.64 |
| KRH53215 | Soybean | endoplasmic reticulum | 61.57 | 62.74 |
| Solyc11g013000.1.1 | Tomato | plastid | 60.65 | 62.38 |
| Zm00001d037163_P002 | Maize | extracellular, plasma membrane | 60.65 | 62.09 |
| GSMUA_Achr6P02320_001 | Banana | endoplasmic reticulum, plasma membrane | 62.04 | 62.04 |
| PGSC0003DMT400002378 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 60.19 | 61.9 |
| EER88046 | Sorghum | endoplasmic reticulum | 61.11 | 61.68 |
| KRH64707 | Soybean | plasma membrane | 61.11 | 61.4 |
| KRH18772 | Soybean | plasma membrane | 61.11 | 61.4 |
| AT1G09580.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 61.57 | 61.29 |
| KRH16308 | Soybean | endoplasmic reticulum | 60.65 | 60.93 |
| AT1G57620.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 59.72 | 60.85 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 60.65 | 60.65 |
| TraesCS6D01G309100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 58.8 | 60.19 |
| TraesCS6B01G361000.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 58.8 | 60.19 |
| TraesCS7B01G074300.1 | Wheat | plasma membrane | 60.19 | 60.19 |
| Os02t0768200-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 60.65 | 60.09 |
| TraesCS6A01G330200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 58.33 | 59.72 |
| EES07590 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 56.48 | 58.94 |
| Zm00001d018194_P001 | Maize | extracellular | 43.06 | 55.36 |
| GSMUA_Achr3P20310_001 | Banana | plasma membrane | 55.09 | 55.09 |
| VIT_18s0001g03200.t01 | Wine grape | endoplasmic reticulum | 51.39 | 54.68 |
| EER96837 | Sorghum | extracellular | 52.31 | 54.33 |
| TraesCS5B01G233900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 52.31 | 54.07 |
| Zm00001d005857_P001 | Maize | cytosol, golgi | 40.28 | 54.04 |
| TraesCS5D01G242600.1 | Wheat | endoplasmic reticulum | 51.85 | 53.33 |
| TraesCS5A01G235500.1 | Wheat | extracellular, vacuole | 51.85 | 53.33 |
| PGSC0003DMT400045273 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 51.39 | 52.86 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 53.24 | 52.51 |
| Os09t0453200-00 | Rice | endoplasmic reticulum, plasma membrane | 50.93 | 51.89 |
| PGSC0003DMT400045277 | Potato | extracellular | 51.39 | 51.87 |
| PGSC0003DMT400045270 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 50.93 | 51.16 |
| Solyc06g060450.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 50.0 | 50.23 |
| AT3G10780.1 | Thale cress | endoplasmic reticulum, plasma membrane | 50.0 | 49.77 |
| Solyc06g060440.1.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 48.61 | 49.3 |
| HORVU5Hr1G067730.1 | Barley | cytosol, peroxisome | 50.46 | 48.44 |
| HORVU7Hr1G035390.1 | Barley | mitochondrion, plastid | 60.65 | 47.81 |
| Solyc06g060430.1.1 | Tomato | cytosol | 19.91 | 46.74 |
| Os08t0469400-00 | Rice | endoplasmic reticulum, extracellular, vacuole | 29.63 | 46.72 |
| KXG25366 | Sorghum | plasma membrane | 46.76 | 40.4 |
| Bra017957.1-P | Field mustard | endoplasmic reticulum, golgi, vacuole | 57.41 | 39.87 |
| AT1G26690.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 38.43 | 38.78 |
| AT1G69460.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 36.57 | 36.92 |
| AT1G14010.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 35.65 | 36.32 |
| AT2G03290.1 | Thale cress | extracellular | 35.65 | 36.15 |
| GSMUA_Achr6P10010_001 | Banana | nucleus, peroxisome, plasma membrane | 52.31 | 35.53 |
| AT3G29070.1 | Thale cress | mitochondrion | 32.87 | 31.56 |
| AT2G03040.1 | Thale cress | extracellular | 24.07 | 31.33 |
Protein Annotations
| MapMan:22.3.5.2 | EntrezGene:838792 | ProteinID:AAF16541.1 | ProteinID:AEE30170.1 | ArrayExpress:AT1G21900 | EnsemblPlantsGene:AT1G21900 |
| RefSeq:AT1G21900 | TAIR:AT1G21900 | RefSeq:AT1G21900-TAIR-G | EnsemblPlants:AT1G21900.1 | TAIR:AT1G21900.1 | EMBL:AY092996 |
| EMBL:AY114612 | Unigene:At.41637 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0005801 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | GO:GO:0030134 | InterPro:GOLD_dom |
| InterPro:IPR009038 | RefSeq:NP_173608.1 | PFAM:PF01105 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50866 | PANTHER:PTHR22811 | PANTHER:PTHR22811:SF76 | UniProt:Q8RWM6 | SMART:SM01190 | SignalP:SignalP-noTM |
| InterPro:TMP21-related | TMHMM:TMhelix | UniParc:UPI00000A18D8 | SEG:seg | : | : |
Description
Transmembrane emp24 domain-containing protein p24delta5 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWM6]
Coordinates
chr1:-:7690802..7692459
Molecular Weight (calculated)
24347.2 Da
IEP (calculated)
6.718
GRAVY (calculated)
-0.032
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MAINRIAHGS LFLTVVLFFL TVNYGEAIWL TIPTTGGTKC VSEEIQSNVV VLADYYVVDE HNPENTPAVS SKVTSPYGNN LHHQENVTHG QFAFTTQEAG
101: NYLACFWIDS SHHLANPITL GVDWKMGIAA KDWDSVAKKE KIEGVELQLR RLEGLVLSIR ENLNYIKDRE AEMREVSETT NSRVAWFSIM SLGVCVVVVG
201: SQILYLKRYF HKKKLI
101: NYLACFWIDS SHHLANPITL GVDWKMGIAA KDWDSVAKKE KIEGVELQLR RLEGLVLSIR ENLNYIKDRE AEMREVSETT NSRVAWFSIM SLGVCVVVVG
201: SQILYLKRYF HKKKLI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.