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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 6
  • golgi 5
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:extracellular
 plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400002378 Potato endoplasmic reticulum, extracellular, plasma membrane 98.1 98.1
Solyc10g045640.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 65.71 64.49
Solyc01g104220.2.1 Tomato endoplasmic reticulum 64.76 64.15
KRH53215 Soybean endoplasmic reticulum 64.76 64.15
TraesCS7A01G169500.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 58.57 63.4
KRH16308 Soybean endoplasmic reticulum 64.76 63.26
TraesCS7D01G170400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 58.1 62.89
KRH64707 Soybean plasma membrane 64.29 62.79
KRH18772 Soybean plasma membrane 64.29 62.79
GSMUA_Achr6P02320_001 Banana endoplasmic reticulum, plasma membrane 64.29 62.5
EES07590 Sorghum endoplasmic reticulum, extracellular, vacuole 60.0 60.87
AT1G21900.1 Thale cress plasma membrane 62.38 60.65
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, plasma membrane 61.9 60.19
CDY04681 Canola endoplasmic reticulum 59.05 59.05
Os06t0210100-01 Rice plastid 58.57 58.85
TraesCS6B01G361000.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 58.57 58.29
EER88046 Sorghum endoplasmic reticulum 59.05 57.94
TraesCS6A01G330200.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 58.1 57.82
Zm00001d037163_P002 Maize extracellular, plasma membrane 58.1 57.82
TraesCS6D01G309100.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 58.1 57.82
Zm00001d018194_P001 Maize extracellular 46.19 57.74
Solyc06g060440.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 58.1 57.28
VIT_18s0001g03200.t01 Wine grape endoplasmic reticulum 55.24 57.14
Zm00001d005857_P001 Maize cytosol, golgi 43.33 56.52
TraesCS7B01G074300.1 Wheat plasma membrane 58.1 56.48
Os02t0768200-01 Rice endoplasmic reticulum, plasma membrane, vacuole 58.57 56.42
CDX96570 Canola endoplasmic reticulum, extracellular, plasma membrane 62.38 56.22
EER96837 Sorghum extracellular 55.24 55.77
Os09t0453200-00 Rice endoplasmic reticulum, plasma membrane 56.19 55.66
GSMUA_Achr3P20310_001 Banana plasma membrane 57.14 55.56
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, vacuole 57.62 55.25
Solyc06g060450.2.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 56.19 54.88
CDY38827 Canola endoplasmic reticulum, extracellular, vacuole 61.9 54.62
TraesCS5B01G233900.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 53.81 54.07
Bra016401.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 61.9 53.72
TraesCS5A01G235500.1 Wheat extracellular, vacuole 53.33 53.33
TraesCS5D01G242600.1 Wheat endoplasmic reticulum 53.33 53.33
Solyc06g060430.1.1 Tomato cytosol 22.86 52.17
HORVU5Hr1G067730.1 Barley cytosol, peroxisome 53.81 50.22
CDY08168 Canola endoplasmic reticulum 36.67 46.67
Os08t0469400-00 Rice endoplasmic reticulum, extracellular, vacuole 30.0 45.99
HORVU7Hr1G035390.1 Barley mitochondrion, plastid 58.1 44.53
KXG25366 Sorghum plasma membrane 52.38 44.0
Solyc04g005570.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 40.48 39.53
Solyc05g013130.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 39.05 38.5
Solyc01g010940.2.1 Tomato nucleus, plastid 39.05 37.96
GSMUA_Achr6P10010_001 Banana nucleus, peroxisome, plasma membrane 56.19 37.11
Bra017957.1-P Field mustard endoplasmic reticulum, golgi, vacuole 41.43 27.97
Protein Annotations
EnsemblPlants:Solyc11g013000.1.1EnsemblPlantsGene:Solyc11g013000.1GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:GOLD_dom
InterPro:IPR009038InterPro:TMP21-relatedPANTHER:PTHR22811PANTHER:PTHR22811:SF76PFAM:PF01105PFscan:PS50866
SEG:segSignalP:SignalP-noTMSMART:SM01190TMHMM:TMhelixUniParc:UPI000276A299UniProt:K4D6A4
MapMan:22.3.5.2:::::
Description
No Description!
Coordinates
chr11:+:5850497..5854023
Molecular Weight (calculated)
23427.4 Da
IEP (calculated)
5.891
GRAVY (calculated)
0.089
Length
210 amino acids
Sequence
(BLAST)
001: MELCKLVLLL LTVITVAEAI WMELPTSGTK CLSEDIHSNV VVLADYSVIG DEEHAQANVV PTISVKVTSP FGNNLHHKEN VTHGQFAFTT TEAGNYLACF
101: WMDNHAPGAK AVTIGIDWKT GISAKDWESV ARKEKIEGVE LELVKLEGIV QAIHENLEYL KDREAVMREE NEKTNARVAW LSIMSLGICI AAAVLQVFYL
201: KNFFRKKKLI
Best Arabidopsis Sequence Match ( AT1G09580.1 )
(BLAST)
001: MKMTAKMRRE FPTAFLLLFL VPVMIPVGEA VWLDVPPTGT KCVSEEIQSN VVVLADYLII SEDHEVMPTI SVKVTSPYGN NLHNMENVTH GQFAFTTQES
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta3 [Source:UniProtKB/Swiss-Prot;Acc:Q6IDL4]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.