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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 7
  • golgi 5
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plasma membrane, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400045277 Potato extracellular 88.37 88.78
Solyc06g060440.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 80.93 81.69
Solyc06g060430.1.1 Tomato cytosol 26.98 63.04
Solyc11g013000.1.1 Tomato plastid 54.88 56.19
KRH53215 Soybean endoplasmic reticulum 52.56 53.3
KRH64707 Soybean plasma membrane 52.56 52.56
Solyc01g104220.2.1 Tomato endoplasmic reticulum 51.63 52.36
TraesCS7A01G169500.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 46.98 52.06
TraesCS7D01G170400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 46.51 51.55
GSMUA_Achr6P02320_001 Banana endoplasmic reticulum, plasma membrane 51.16 50.93
EES07590 Sorghum endoplasmic reticulum, extracellular, vacuole 48.84 50.72
Zm00001d037163_P002 Maize extracellular, plasma membrane 49.77 50.71
CDY04681 Canola endoplasmic reticulum 49.3 50.48
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, plasma membrane 50.7 50.46
AT1G21900.1 Thale cress plasma membrane 50.23 50.0
TraesCS6B01G361000.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 48.84 49.76
Os02t0768200-01 Rice endoplasmic reticulum, plasma membrane, vacuole 50.23 49.54
Solyc10g045640.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 49.3 49.53
KRH16308 Soybean endoplasmic reticulum 49.3 49.3
TraesCS6D01G309100.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 48.37 49.29
TraesCS6A01G330200.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 48.37 49.29
EER88046 Sorghum endoplasmic reticulum 48.84 49.07
KRH18772 Soybean plasma membrane 48.84 48.84
Os06t0210100-01 Rice plastid 47.44 48.8
Zm00001d018194_P001 Maize extracellular 37.67 48.21
CDX96570 Canola endoplasmic reticulum, extracellular, plasma membrane 52.09 48.07
GSMUA_Achr3P20310_001 Banana plasma membrane 47.91 47.69
VIT_18s0001g03200.t01 Wine grape endoplasmic reticulum 44.65 47.29
TraesCS7B01G074300.1 Wheat plasma membrane 46.98 46.76
CDY38827 Canola endoplasmic reticulum, extracellular, vacuole 51.63 46.64
TraesCS5B01G233900.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 45.12 46.41
Bra016401.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 52.09 46.28
TraesCS5A01G235500.1 Wheat extracellular, vacuole 44.65 45.71
TraesCS5D01G242600.1 Wheat endoplasmic reticulum 44.65 45.71
Zm00001d005857_P001 Maize cytosol, golgi 33.95 45.34
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, vacuole 46.05 45.21
EER96837 Sorghum extracellular 43.72 45.19
Os09t0453200-00 Rice endoplasmic reticulum, plasma membrane 42.33 42.92
CDY08168 Canola endoplasmic reticulum 32.09 41.82
HORVU5Hr1G067730.1 Barley cytosol, peroxisome 42.33 40.44
Os08t0469400-00 Rice endoplasmic reticulum, extracellular, vacuole 25.12 39.42
Solyc04g005570.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 37.21 37.21
HORVU7Hr1G035390.1 Barley mitochondrion, plastid 46.98 36.86
Solyc01g010940.2.1 Tomato nucleus, plastid 34.88 34.72
Solyc05g013130.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 33.02 33.33
KXG25366 Sorghum plasma membrane 38.6 33.2
GSMUA_Achr6P10010_001 Banana nucleus, peroxisome, plasma membrane 46.05 31.13
Bra017957.1-P Field mustard endoplasmic reticulum, golgi, vacuole 35.35 24.44
Protein Annotations
MapMan:22.3.5.2GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783
GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:GOLD_domInterPro:IPR009038UniProt:K4C6M5
PFAM:PF01105PFscan:PS50866PANTHER:PTHR22811PANTHER:PTHR22811:SF68SMART:SM01190SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc06g060450.2EnsemblPlants:Solyc06g060450.2.1InterPro:TMP21-relatedTMHMM:TMhelixUniParc:UPI0002766161SEG:seg
Description
No Description!
Coordinates
chr6:+:38473581..38475325
Molecular Weight (calculated)
24707.5 Da
IEP (calculated)
9.061
GRAVY (calculated)
0.072
Length
215 amino acids
Sequence
(BLAST)
001: MKLMKVLKLI LVVVTMAMTM AEALWLEMPS SGAKCVYEEI RNNVVVLVEY AIVGINEQNQ YSFIRDLISL KVTSPFGKIL HHENNVTNGE FGFTTTEPGN
101: YMACFFMNSQ TPDGKAVHIG LDWKIGIAAK DWYSIARKEK IQDIELVLMK FQAWVQSIRE KLIYMKKREE EMSEVSERTN AAVAWFSGMS LSLCILAAAT
201: QIWYLKRFFR KKNLI
Best Arabidopsis Sequence Match ( AT1G21900.1 )
(BLAST)
001: MAINRIAHGS LFLTVVLFFL TVNYGEAIWL TIPTTGGTKC VSEEIQSNVV VLADYYVVDE HNPENTPAVS SKVTSPYGNN LHHQENVTHG QFAFTTQEAG
101: NYLACFWIDS SHHLANPITL GVDWKMGIAA KDWDSVAKKE KIEGVELQLR RLEGLVLSIR ENLNYIKDRE AEMREVSETT NSRVAWFSIM SLGVCVVVVG
201: SQILYLKRYF HKKKLI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta5 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWM6]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.