Factsheet for Zm00001d037163_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 6
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88046	Sorghum	endoplasmic reticulum	97.16	95.79
Os06t0210100-01	Rice	plastid	86.73	87.56
TraesCS7D01G170400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	78.67	85.57
TraesCS7A01G169500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	78.2	85.05
TraesCS7B01G074300.1	Wheat	plasma membrane	81.99	80.09
Zm00001d018194_P001	Maize	extracellular	58.29	73.21
GSMUA_Achr6P02320_001	Banana	endoplasmic reticulum, plasma membrane	72.04	70.37
KRH48283	Soybean	cytosol	25.59	70.13
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, plasma membrane	70.62	68.98
KRH59179	Soybean	endoplasmic reticulum	67.3	67.3
VIT_12s0034g01440.t01	Wine grape	endoplasmic reticulum, extracellular	67.77	66.2
Zm00001d005857_P001	Maize	cytosol, golgi	50.24	65.84
GSMUA_Achr3P20310_001	Banana	plasma membrane	66.82	65.28
AT1G09580.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	65.4	63.59
Bra027911.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	63.98	62.5
CDY39938	Canola	endoplasmic reticulum, extracellular, plasma membrane	63.98	62.5
HORVU7Hr1G035390.1	Barley	mitochondrion, plastid	81.04	62.41
CDY31789	Canola	plasma membrane	63.51	62.33
KRH18772	Soybean	plasma membrane	63.51	62.33
KRH16308	Soybean	endoplasmic reticulum	63.03	61.86
CDX95293	Canola	endoplasmic reticulum, extracellular, golgi	63.03	61.57
KRH43057	Soybean	extracellular	45.5	61.54
Bra038147.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	62.56	61.4
Bra020010.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	61.61	61.32
Solyc10g045640.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	62.09	61.22
CDY23801	Canola	endoplasmic reticulum, extracellular, plasma membrane	62.09	60.93
AT1G21900.1	Thale cress	plasma membrane	62.09	60.65
Bra030786.1-P	Field mustard	extracellular	60.19	60.19
AT1G57620.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	60.19	59.91
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, vacuole	62.09	59.82
PGSC0003DMT400061146	Potato	extracellular	59.24	59.52
KRH53215	Soybean	endoplasmic reticulum	59.72	59.43
KRH64707	Soybean	plasma membrane	60.19	59.07
Solyc01g104220.2.1	Tomato	endoplasmic reticulum	59.24	58.96
VIT_18s0001g03200.t01	Wine grape	endoplasmic reticulum	56.4	58.62
KRH10436	Soybean	endoplasmic reticulum	59.24	58.14
PGSC0003DMT400002378	Potato	endoplasmic reticulum, extracellular, plasma membrane	57.82	58.1
Solyc11g013000.1.1	Tomato	plastid	57.82	58.1
CDY50894	Canola	endoplasmic reticulum, golgi, plasma membrane	61.61	58.04
CDX93498	Canola	endoplasmic reticulum, golgi, plasma membrane	61.61	58.04
CDY04681	Canola	endoplasmic reticulum	56.4	56.67
CDY31078	Canola	endoplasmic reticulum	59.72	56.25
CDY20688	Canola	endoplasmic reticulum, golgi, nucleus	59.24	55.8
PGSC0003DMT400045270	Potato	endoplasmic reticulum, extracellular, plasma membrane	54.5	53.49
KRH44035	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane	60.19	51.63
PGSC0003DMT400045273	Potato	endoplasmic reticulum, extracellular, plasma membrane	50.71	50.95
CDX96570	Canola	endoplasmic reticulum, extracellular, plasma membrane	55.92	50.64
PGSC0003DMT400045277	Potato	extracellular	51.18	50.47
Solyc06g060450.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	50.71	49.77
Solyc06g060440.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	50.24	49.77
CDY38827	Canola	endoplasmic reticulum, extracellular, vacuole	55.45	49.16
Bra016401.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	55.92	48.76
CDY08168	Canola	endoplasmic reticulum	36.97	47.27
Solyc06g060430.1.1	Tomato	cytosol	19.43	44.57
Zm00001d006951_P001	Maize	mitochondrion	46.45	42.79
Zm00001d022238_P001	Maize	mitochondrion	45.02	41.48
GSMUA_Achr6P10010_001	Banana	nucleus, peroxisome, plasma membrane	61.14	40.57
Zm00001d047163_P001	Maize	endoplasmic reticulum, extracellular, vacuole	35.07	29.84
Bra017957.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	39.34	26.69

Protein Annotations

EntrezGene:100273431	MapMan:22.3.5.2	ProteinID:AQK83193.1	UniProt:B4FVH9	EMBL:BT041117	ncoils:Coil
EMBL:EU963791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:GOLD_dom	InterPro:IPR009038	PFAM:PF01105
PFscan:PS50866	PANTHER:PTHR22811	PANTHER:PTHR22811:SF68	SMART:SM01190	SignalP:SignalP-noTM	InterPro:TMP21-related
TMHMM:TMhelix	UniParc:UPI00017B79EA	EnsemblPlantsGene:Zm00001d037163	EnsemblPlants:Zm00001d037163_P002	EnsemblPlants:Zm00001d037163_T002	SEG:seg

Description

Transmembrane emp24 domain-containing protein p24delta4

Coordinates

chr6:+:114526755..114531919

Molecular Weight (calculated)

23206.0 Da

IEP (calculated)

6.627

GRAVY (calculated)

0.165

Length

211 amino acids

Sequence
(BLAST)

001: MAASVFPALL LAVAAVLLLP VAEAVWLELP PSGTKCVSEE IQPNVVVLAD YAIMYESHPS SHPTVAVKVT SPYGNTVHHN ENATTGQFAF TTSEAGNYLA
101: CFWIDSVEKG SGTSLNLDWK IGIAAKDWDT IAKKEKIEGV ELELRKLEAA VESIHHNLLY LKAREADMRT VSERTNSRVA WFSILSLGVC VAVSVLQLWH
201: LQGFFRKKKL I

Best Arabidopsis Sequence Match ( AT1G09580.1 )
(BLAST)

001: MKMTAKMRRE FPTAFLLLFL VPVMIPVGEA VWLDVPPTGT KCVSEEIQSN VVVLADYLII SEDHEVMPTI SVKVTSPYGN NLHNMENVTH GQFAFTTQES
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI

Arabidopsis Description

Transmembrane emp24 domain-containing protein p24delta3 [Source:UniProtKB/Swiss-Prot;Acc:Q6IDL4]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.