Factsheet for Zm00001d022238_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	endoplasmic reticulum, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006951_P001	Maize	mitochondrion	97.82	97.82
EER97600	Sorghum	mitochondrion	97.82	97.82
TraesCS2A01G155600.1	Wheat	golgi	84.28	84.65
TraesCS2B01G180800.1	Wheat	mitochondrion	84.28	84.65
TraesCS2D01G161400.1	Wheat	endoplasmic reticulum, plastid	82.53	82.89
Os07t0632700-01	Rice	plasma membrane	82.97	82.61
HORVU2Hr1G028220.5	Barley	endoplasmic reticulum, extracellular	80.79	79.74
CDY37184	Canola	endoplasmic reticulum, peroxisome, plastid	16.59	76.0
GSMUA_Achr1P21760_001	Banana	cytosol	55.02	74.56
GSMUA_AchrUn_...	Banana	cytosol	53.71	72.78
VIT_14s0108g01140.t01	Wine grape	extracellular	58.08	63.33
VIT_01s0182g00030.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	57.64	62.26
KRH50555	Soybean	endoplasmic reticulum	58.08	60.18
Solyc05g013130.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	55.46	59.62
PGSC0003DMT400073002	Potato	extracellular	55.46	59.62
PGSC0003DMT400007416	Potato	endoplasmic reticulum, extracellular, vacuole	55.46	59.35
KRG89554	Soybean	endoplasmic reticulum	56.33	58.64
Solyc04g005570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	55.02	58.6
AT1G26690.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	54.59	58.41
KRH18453	Soybean	golgi, plasma membrane, vacuole	55.02	58.33
CDY00102	Canola	cytosol	42.79	57.99
KRG93569	Soybean	endoplasmic reticulum, extracellular, plasma membrane	54.59	57.87
Bra026866.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	53.28	57.55
CDY33785	Canola	endoplasmic reticulum, extracellular, plasma membrane	53.28	57.55
CDY16125	Canola	endoplasmic reticulum, extracellular, plasma membrane	52.84	57.08
CDX85047	Canola	endoplasmic reticulum	53.28	57.01
CDX96872	Canola	endoplasmic reticulum, extracellular, plasma membrane	52.84	56.81
CDY16181	Canola	endoplasmic reticulum, plasma membrane, vacuole	52.84	56.54
KRH13540	Soybean	cytosol	19.21	56.41
Bra024694.1-P	Field mustard	endoplasmic reticulum, plasma membrane	52.4	56.07
CDY61620	Canola	endoplasmic reticulum	52.4	56.07
Bra016283.1-P	Field mustard	endoplasmic reticulum	52.4	56.07
CDY62212	Canola	endoplasmic reticulum, extracellular, plasma membrane	51.53	55.4
AT1G14010.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	51.09	55.19
CDY24142	Canola	endoplasmic reticulum, plasma membrane, vacuole	51.53	55.14
PGSC0003DMT400062438	Potato	mitochondrion	51.97	55.09
Solyc01g010940.2.1	Tomato	nucleus, plastid	51.53	54.63
Bra004382.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	51.09	54.42
CDX95934	Canola	vacuole	51.09	54.42
Zm00001d047163_P001	Maize	endoplasmic reticulum, extracellular, vacuole	58.08	53.63
AT2G03290.1	Thale cress	extracellular	49.78	53.52
CDY40925	Canola	endoplasmic reticulum	50.22	53.49
KRH70789	Soybean	cytosol, vacuole	17.03	53.42
AT1G69460.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	49.34	52.8
Bra036221.1-P	Field mustard	endoplasmic reticulum, extracellular	49.34	52.31
CDY19998	Canola	endoplasmic reticulum, extracellular	49.34	52.31
CDY03005	Canola	endoplasmic reticulum, extracellular, plasma membrane	48.47	51.87
CDY04053	Canola	endoplasmic reticulum	50.22	51.57
CDY45170	Canola	endoplasmic reticulum, extracellular	48.03	51.4
Bra024781.1-P	Field mustard	endoplasmic reticulum, extracellular	48.03	51.4
CDY44411	Canola	golgi, plasma membrane, plastid	49.78	51.35
Bra033081.1-P	Field mustard	golgi, plasma membrane, plastid	49.78	51.35
CDX85243	Canola	mitochondrion	49.78	51.35
Bra026559.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	48.03	50.93
CDY53680	Canola	endoplasmic reticulum, extracellular, vacuole	47.6	50.46
CDY09334	Canola	endoplasmic reticulum, extracellular, vacuole	47.6	50.46
KRH70788	Soybean	extracellular	31.0	49.65
AT3G29070.1	Thale cress	mitochondrion	48.47	49.33
KRH01218	Soybean	endoplasmic reticulum, plasma membrane, vacuole	46.72	49.08
AT2G03040.1	Thale cress	extracellular	33.62	46.39
Bra016715.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	39.74	45.27
Zm00001d037163_P002	Maize	extracellular, plasma membrane	41.48	45.02
Zm00001d005857_P001	Maize	cytosol, golgi	29.69	42.24
Zm00001d018194_P001	Maize	extracellular	29.26	39.88

Protein Annotations

EntrezGene:100191273	MapMan:22.3.5.2	UniProt:B4F881	EMBL:BT033319	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
GO:GO:0016021	InterPro:GOLD_dom	InterPro:IPR009038	ProteinID:ONM59912.1	PFAM:PF01105	PFscan:PS50866
PANTHER:PTHR22811	PANTHER:PTHR22811:SF112	SMART:SM01190	SignalP:SignalP-noTM	InterPro:TMP21-related	TMHMM:TMhelix
UniParc:UPI00017B6008	EnsemblPlantsGene:Zm00001d022238	EnsemblPlants:Zm00001d022238_P001	EnsemblPlants:Zm00001d022238_T001	SEG:seg	:

Description

Transmembrane emp24 domain-containing protein p24delta9

Coordinates

chr7:+:173392122..173395313

Molecular Weight (calculated)

25867.2 Da

IEP (calculated)

8.473

GRAVY (calculated)

-0.262

Length

229 amino acids

Sequence
(BLAST)

001: MAARRLGSPA SRWLRPSALL LLVASALLSA PSPARALRFD LESGHTKCIS DEIKVNAMAV GKYHIVSPDP NFPDAQLPES HRISLRVTSP YGNSMHYAEN
101: VQSGHFAFTA AEAGDYLACF WAPDHKPPVT IGFEFDWRSG VSAKDYPSVA KKGKVDMMEL ELKKLEETIK NIHEEMFYLR EREEEMQDLN RRTNSRMAWL
201: GFLSLGVCLS VAGLQLWHLK TFFERKKLL

Best Arabidopsis Sequence Match ( AT1G26690.1 )
(BLAST)

001: MFLRSLNLCT ILLFLAISSQ VSQSLHFELQ SGRTKCISED IKSNSMTVGK YTVVNPNEAH PSPQSHKISI RVTSSYGNTY HHAEDVESGQ FAFTAVESGD
101: YMACYTAVDH KPEVTLSIDF DWRTGVQSKS WSSVAKKSQV EVMEFDVKRL IETVNSIHEE MFYLREREEE MQNLNRATNS KMAWLSFLSL FVCLGVAGMQ
201: FVHLKTFFEK KKVI

Arabidopsis Description

Transmembrane emp24 domain-containing protein p24delta9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQY3]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.