Factsheet for VIT_14s0108g01140.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 6
golgi 4
plasma membrane 5
endoplasmic reticulum 5
vacuole 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13540	Soybean	cytosol	28.1	75.64
GSMUA_Achr1P21760_001	Banana	cytosol	58.57	72.78
KRH18453	Soybean	golgi, plasma membrane, vacuole	73.81	71.76
GSMUA_AchrUn_...	Banana	cytosol	57.62	71.6
KRG93569	Soybean	endoplasmic reticulum, extracellular, plasma membrane	72.38	70.37
VIT_01s0182g00030.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	70.95	70.28
EER92205	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	64.76	63.55
KRH01218	Soybean	endoplasmic reticulum, plasma membrane, vacuole	63.33	61.01
Os07t0632700-01	Rice	plasma membrane	65.24	59.57
TraesCS2B01G180800.1	Wheat	mitochondrion	64.29	59.21
TraesCS2D01G161400.1	Wheat	endoplasmic reticulum, plastid	63.81	58.77
TraesCS2A01G155600.1	Wheat	golgi	63.81	58.77
HORVU2Hr1G028220.5	Barley	endoplasmic reticulum, extracellular	64.76	58.62
CDY00102	Canola	cytosol	47.14	58.58
Zm00001d022238_P001	Maize	mitochondrion	63.33	58.08
EER97600	Sorghum	mitochondrion	62.86	57.64
Os03t0376000-01	Rice	endoplasmic reticulum, plasma membrane	62.86	56.9
Zm00001d006951_P001	Maize	mitochondrion	61.9	56.77
Bra033081.1-P	Field mustard	golgi, plasma membrane, plastid	58.1	54.95
CDY44411	Canola	golgi, plasma membrane, plastid	58.1	54.95
CDY04053	Canola	endoplasmic reticulum	58.1	54.71
CDY19998	Canola	endoplasmic reticulum, extracellular	56.19	54.63
Bra036221.1-P	Field mustard	endoplasmic reticulum, extracellular	56.19	54.63
CDX85243	Canola	mitochondrion	56.67	53.6
AT3G29070.1	Thale cress	mitochondrion	54.76	51.11
Zm00001d047163_P001	Maize	endoplasmic reticulum, extracellular, vacuole	48.57	41.13
VIT_12s0034g01440.t01	Wine grape	endoplasmic reticulum, extracellular	41.43	40.28
VIT_18s0001g03200.t01	Wine grape	endoplasmic reticulum	37.62	38.92

Protein Annotations

EntrezGene:100257605	wikigene:100257605	MapMan:22.3.5.2	ProteinID:CCB47578	ProteinID:CCB47578.1	UniProt:F6H5V7
EMBL:FN595239	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:GOLD_dom	InterPro:IPR009038
EntrezGene:LOC100257605	wikigene:LOC100257605	PFAM:PF01105	PFscan:PS50866	PANTHER:PTHR22811	PANTHER:PTHR22811:SF72
SMART:SM01190	SignalP:SignalP-noTM	TIGR:TC53769	InterPro:TMP21-related	TMHMM:TMhelix	UniParc:UPI00015CA1B6
ArrayExpress:VIT_14s0108g01140	EnsemblPlantsGene:VIT_14s0108g01140	EnsemblPlants:VIT_14s0108g01140.t01	unigene:Vvi.4628	RefSeq:XP_002283884	RefSeq:XP_002283884.1
RefSeq:XP_003633845	RefSeq:XP_003633845.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:+:29772936..29776952

Molecular Weight (calculated)

23722.4 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.231

Length

210 amino acids

Sequence
(BLAST)

001: MSRFKTLIVI VGLMCTAADS MRFDLTSGGT KCISEDIKTN AMSVGKYSVI NPNEGFPLPD THKITAQVSS PYGNNYHTGD HIESGNFAFT AAEEGDYTAC
101: FWAPQHKPPL TVTIDFDWRT GVAAKDWSKV AKKGQVEVME LELKKLYDTV TSIHEEMFYL REREEEMQEL NRATNSKMAT FSFLSLLVCL SVAGLQLWHL
201: KTFFERKKLL

Best Arabidopsis Sequence Match ( AT1G26690.1 )
(BLAST)

001: MFLRSLNLCT ILLFLAISSQ VSQSLHFELQ SGRTKCISED IKSNSMTVGK YTVVNPNEAH PSPQSHKISI RVTSSYGNTY HHAEDVESGQ FAFTAVESGD
101: YMACYTAVDH KPEVTLSIDF DWRTGVQSKS WSSVAKKSQV EVMEFDVKRL IETVNSIHEE MFYLREREEE MQNLNRATNS KMAWLSFLSL FVCLGVAGMQ
201: FVHLKTFFEK KKVI

Arabidopsis Description

Transmembrane emp24 domain-containing protein p24delta9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQY3]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.