Factsheet for PGSC0003DMT400062438

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010940.2.1	Tomato	nucleus, plastid	97.22	97.22
PGSC0003DMT400007416	Potato	endoplasmic reticulum, extracellular, vacuole	74.54	75.23
PGSC0003DMT400073002	Potato	extracellular	73.15	74.18
CDY37184	Canola	endoplasmic reticulum, peroxisome, plastid	14.81	64.0
KRH50555	Soybean	endoplasmic reticulum	62.96	61.54
CDY33785	Canola	endoplasmic reticulum, extracellular, plasma membrane	59.72	60.85
Bra026866.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	59.72	60.85
CDY16125	Canola	endoplasmic reticulum, extracellular, plasma membrane	59.26	60.38
VIT_01s0182g00030.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	59.26	60.38
KRG89554	Soybean	endoplasmic reticulum	60.65	59.55
AT1G14010.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	56.94	58.02
CDY62212	Canola	endoplasmic reticulum, extracellular, plasma membrane	56.94	57.75
CDX96872	Canola	endoplasmic reticulum, extracellular, plasma membrane	56.94	57.75
GSMUA_Achr1P21760_001	Banana	cytosol	44.44	56.8
GSMUA_AchrUn_...	Banana	cytosol	44.44	56.8
AT1G69460.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	55.56	56.07
AT1G26690.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	54.63	55.14
CDY16181	Canola	endoplasmic reticulum, plasma membrane, vacuole	54.17	54.67
Bra024694.1-P	Field mustard	endoplasmic reticulum, plasma membrane	53.7	54.21
CDX85047	Canola	endoplasmic reticulum	53.7	54.21
AT2G03290.1	Thale cress	extracellular	53.24	53.99
CDY24142	Canola	endoplasmic reticulum, plasma membrane, vacuole	53.24	53.74
CDY61620	Canola	endoplasmic reticulum	52.78	53.27
EER92205	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	52.78	53.27
Bra016283.1-P	Field mustard	endoplasmic reticulum	52.78	53.27
TraesCS2A01G155600.1	Wheat	golgi	56.02	53.07
Os07t0632700-01	Rice	plasma membrane	56.48	53.04
CDY40925	Canola	endoplasmic reticulum	52.78	53.02
Bra004382.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	52.78	53.02
CDY03005	Canola	endoplasmic reticulum, extracellular, plasma membrane	52.31	52.8
CDX95934	Canola	vacuole	52.31	52.56
EER97600	Sorghum	mitochondrion	55.56	52.4
Bra024781.1-P	Field mustard	endoplasmic reticulum, extracellular	51.85	52.34
CDY45170	Canola	endoplasmic reticulum, extracellular	51.85	52.34
TraesCS2B01G180800.1	Wheat	mitochondrion	55.09	52.19
Zm00001d022238_P001	Maize	mitochondrion	55.09	51.97
CDY53680	Canola	endoplasmic reticulum, extracellular, vacuole	51.85	51.85
TraesCS2D01G161400.1	Wheat	endoplasmic reticulum, plastid	54.63	51.75
Bra026559.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	51.39	51.39
HORVU2Hr1G028220.5	Barley	endoplasmic reticulum, extracellular	55.09	51.29
CDY09334	Canola	endoplasmic reticulum, extracellular, vacuole	50.93	50.93
Zm00001d006951_P001	Maize	mitochondrion	53.7	50.66
KRH70788	Soybean	extracellular	33.33	50.35
AT2G03040.1	Thale cress	extracellular	37.96	49.4
Os03t0376000-01	Rice	endoplasmic reticulum, plasma membrane	52.31	48.71
Bra016715.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	43.98	47.26
KRH70789	Soybean	cytosol, vacuole	14.81	43.84
PGSC0003DMT400002378	Potato	endoplasmic reticulum, extracellular, plasma membrane	37.96	39.05
PGSC0003DMT400045273	Potato	endoplasmic reticulum, extracellular, plasma membrane	34.26	35.24
Zm00001d047163_P001	Maize	endoplasmic reticulum, extracellular, vacuole	40.28	35.08
PGSC0003DMT400045277	Potato	extracellular	34.72	35.05
PGSC0003DMT400045270	Potato	endoplasmic reticulum, extracellular, plasma membrane	33.8	33.95
PGSC0003DMT400061146	Potato	extracellular	32.41	33.33

Protein Annotations

EntrezGene:102602030	MapMan:22.3.5.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:GOLD_dom	InterPro:IPR009038
UniProt:M1C931	PFAM:PF01105	EnsemblPlantsGene:PGSC0003DMG400024300	PGSC:PGSC0003DMG400024300	EnsemblPlants:PGSC0003DMT400062438	PFscan:PS50866
PANTHER:PTHR22811	PANTHER:PTHR22811:SF47	SMART:SM01190	SignalP:SignalP-noTM	InterPro:TMP21-related	TMHMM:TMhelix
UniParc:UPI000294DC8E	RefSeq:XP_006365302.1	:	:	:	:

Description

Transmembrane emp24 domain-containing protein 10 [Source:PGSC_GENE;Acc:PGSC0003DMG400024300]

Coordinates

chr1:-:52481978..52487892

Molecular Weight (calculated)

24746.8 Da

IEP (calculated)

6.628

GRAVY (calculated)

-0.247

Length

216 amino acids

Sequence
(BLAST)

001: MMIWRSKTLF LLVILGIFLT QIESLRFELE SGHTKCIAEE IKGHSMTVGK YHIVNPNEGY PLPDTHKVTV RVTSAQGNSH AHHYAENVHE GHFSFETAEG
101: ADYHTCFTAA DHKPPVKLTI DFDWKSGVAA KDWTNVAKKA SVEAMESELK HMLEIVQGVH DEMFYLRERE EEMQELNRDT SYKLAWMTGL SILICLSVAG
201: LQVWHLKTFF EKKKLI

Best Arabidopsis Sequence Match ( AT1G26690.1 )
(BLAST)

001: MFLRSLNLCT ILLFLAISSQ VSQSLHFELQ SGRTKCISED IKSNSMTVGK YTVVNPNEAH PSPQSHKISI RVTSSYGNTY HHAEDVESGQ FAFTAVESGD
101: YMACYTAVDH KPEVTLSIDF DWRTGVQSKS WSSVAKKSQV EVMEFDVKRL IETVNSIHEE MFYLREREEE MQNLNRATNS KMAWLSFLSL FVCLGVAGMQ
201: FVHLKTFFEK KKVI

Arabidopsis Description

Transmembrane emp24 domain-containing protein p24delta9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQY3]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.