Factsheet for PGSC0003DMT400045273

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g060440.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	89.52	88.26
PGSC0003DMT400045277	Potato	extracellular	81.9	80.37
PGSC0003DMT400045270	Potato	endoplasmic reticulum, extracellular, plasma membrane	67.62	66.05
PGSC0003DMT400002378	Potato	endoplasmic reticulum, extracellular, plasma membrane	59.52	59.52
PGSC0003DMT400061146	Potato	extracellular	57.14	57.14
KRH53215	Soybean	endoplasmic reticulum	56.19	55.66
KRH64707	Soybean	plasma membrane	56.67	55.35
TraesCS7A01G169500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	49.52	53.61
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, plasma membrane	54.76	53.24
TraesCS7D01G170400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	48.57	52.58
GSMUA_Achr6P02320_001	Banana	endoplasmic reticulum, plasma membrane	53.81	52.31
EES07590	Sorghum	endoplasmic reticulum, extracellular, vacuole	51.43	52.17
Os02t0768200-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	53.81	51.83
VIT_18s0001g03200.t01	Wine grape	endoplasmic reticulum	50.0	51.72
AT1G21900.1	Thale cress	plasma membrane	52.86	51.39
Os06t0210100-01	Rice	plastid	50.95	51.2
KRH16308	Soybean	endoplasmic reticulum	52.38	51.16
Zm00001d037163_P002	Maize	extracellular, plasma membrane	50.95	50.71
TraesCS6B01G361000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	50.95	50.71
KRH18772	Soybean	plasma membrane	51.9	50.7
EER88046	Sorghum	endoplasmic reticulum	51.43	50.47
TraesCS6D01G309100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	50.48	50.24
TraesCS6A01G330200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	50.48	50.24
GSMUA_Achr3P20310_001	Banana	plasma membrane	51.43	50.0
CDY04681	Canola	endoplasmic reticulum	49.52	49.52
CDX96570	Canola	endoplasmic reticulum, extracellular, plasma membrane	54.76	49.36
Zm00001d018194_P001	Maize	extracellular	39.05	48.81
TraesCS5B01G233900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	48.1	48.33
CDY38827	Canola	endoplasmic reticulum, extracellular, vacuole	54.29	47.9
TraesCS7B01G074300.1	Wheat	plasma membrane	49.05	47.69
TraesCS5D01G242600.1	Wheat	endoplasmic reticulum	47.62	47.62
Bra016401.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	54.76	47.52
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, vacuole	49.52	47.49
TraesCS5A01G235500.1	Wheat	extracellular, vacuole	46.67	46.67
Os09t0453200-00	Rice	endoplasmic reticulum, plasma membrane	46.67	46.23
Zm00001d005857_P001	Maize	cytosol, golgi	35.24	45.96
EER96837	Sorghum	extracellular	45.24	45.67
HORVU5Hr1G067730.1	Barley	cytosol, peroxisome	45.24	42.22
Os08t0469400-00	Rice	endoplasmic reticulum, extracellular, vacuole	27.14	41.61
CDY08168	Canola	endoplasmic reticulum	32.38	41.21
HORVU7Hr1G035390.1	Barley	mitochondrion, plastid	49.52	37.96
KXG25366	Sorghum	plasma membrane	42.86	36.0
PGSC0003DMT400007416	Potato	endoplasmic reticulum, extracellular, vacuole	35.71	35.05
PGSC0003DMT400073002	Potato	extracellular	35.24	34.74
PGSC0003DMT400062438	Potato	mitochondrion	35.24	34.26
GSMUA_Achr6P10010_001	Banana	nucleus, peroxisome, plasma membrane	49.05	32.39
Bra017957.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	35.24	23.79

Protein Annotations

EnsemblPlants:PGSC0003DMT400045273	EnsemblPlantsGene:PGSC0003DMG400017562	EntrezGene:102601118	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:GOLD_dom	InterPro:IPR009038	InterPro:TMP21-related	PANTHER:PTHR22811	PANTHER:PTHR22811:SF68	PFAM:PF01105
PFscan:PS50866	PGSC:PGSC0003DMG400017562	RefSeq:XP_015159153.1	SEG:seg	SignalP:SignalP-noTM	SMART:SM01190
TMHMM:TMhelix	UniParc:UPI0002966AAF	UniProt:M1BHD6	MapMan:22.3.5.2	:	:

Description

Transmembrane emp24 domain-containing protein 10 [Source:PGSC_GENE;Acc:PGSC0003DMG400017562]

Coordinates

chr6:+:43390359..43392658

Molecular Weight (calculated)

24026.2 Da

IEP (calculated)

6.033

GRAVY (calculated)

-0.035

Length

210 amino acids

Sequence
(BLAST)

001: MKVLKLLVVA TMALTAVEAI WLEMPSSGDK CVYEEIRNNV VVLVNYSVIV DNEPDQPNFI PDISLKVISP FADKLHHEEN VTHGQFGFTT TEPGNYMACF
101: FMNSQAPDGK GIHIGLDWKT GIAAKDWDSI ARKEKIQDIE LVLMKFEAWV QAIHEKLIYL EKREEEMREV SERTNAAVAW FSGMSLSLCI LAAATQIWYL
201: KRFFRKKRLI

Best Arabidopsis Sequence Match ( AT1G21900.1 )
(BLAST)

001: MAINRIAHGS LFLTVVLFFL TVNYGEAIWL TIPTTGGTKC VSEEIQSNVV VLADYYVVDE HNPENTPAVS SKVTSPYGNN LHHQENVTHG QFAFTTQEAG
101: NYLACFWIDS SHHLANPITL GVDWKMGIAA KDWDSVAKKE KIEGVELQLR RLEGLVLSIR ENLNYIKDRE AEMREVSETT NSRVAWFSIM SLGVCVVVVG
201: SQILYLKRYF HKKKLI

Arabidopsis Description

Transmembrane emp24 domain-containing protein p24delta5 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWM6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.