Factsheet for Bra021534.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001302.1-P
Bra007146.1-P
Bra009050.1-P
Bra014771.1-P
Bra024434.1-P
Bra029720.1-P
Bra029780.1-P
Bra034075.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14180.1	Bra029720.1-P	AT3G08780.1	21798944
AT3G14180.1	Bra001302.1-P	AT3G09630.1	21798944
AT3G14180.1	Bra029780.1-P	AT3G09630.1	21798944
AT3G14180.1	Bra034075.1-P	AT3G09630.1	21798944
AT3G14180.1	Bra007146.1-P	AT3G55150.1	21798944
AT3G14180.1	Bra014771.1-P	AT3G55150.1	21798944
AT3G14180.1	Bra009050.1-P	AT5G10210.1	21798944
AT3G14180.1	Bra024434.1-P	AT5G67620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39099	Canola	nucleus	94.52	92.43
Bra021536.1-P	Field mustard	nucleus	76.77	77.78
AT3G14180.1	Thale cress	nucleus	71.94	50.34
VIT_09s0002g00720.t01	Wine grape	nucleus	49.68	42.31
KRH06239	Soybean	nucleus	48.71	40.81
KRH47662	Soybean	nucleus, plastid	48.39	40.76
Solyc03g122030.1.1	Tomato	nucleus	47.42	40.5
PGSC0003DMT400088401	Potato	nucleus, plastid	48.39	40.21
Bra037960.1-P	Field mustard	nucleus, plastid	38.71	39.87
Bra014370.1-P	Field mustard	nucleus	42.58	39.4
Bra034866.1-P	Field mustard	nucleus	29.35	34.87
Bra034165.1-P	Field mustard	nucleus	28.06	31.52
Bra007407.1-P	Field mustard	nucleus, plastid	29.68	31.4
GSMUA_Achr8P23650_001	Banana	nucleus	34.52	31.38
GSMUA_Achr9P14340_001	Banana	nucleus	36.45	31.22
Bra009119.1-P	Field mustard	nucleus	25.16	31.08
Bra030909.1-P	Field mustard	nucleus	12.58	30.47
Bra003346.1-P	Field mustard	nucleus	29.68	30.07
Zm00001d003549_P001	Maize	nucleus	35.48	28.57
Zm00001d025514_P001	Maize	nucleus	35.81	28.32
TraesCS6A01G198600.1	Wheat	nucleus, plastid	33.55	28.11
Os04t0445600-00	Rice	nucleus	37.74	28.06
TraesCS2D01G311800.1	Wheat	nucleus, plastid	37.1	27.84
GSMUA_Achr3P05880_001	Banana	nucleus	36.13	27.72
TraesCS2A01G313300.1	Wheat	nucleus, plastid	37.1	27.64
TraesCS2B01G332100.1	Wheat	nucleus, plastid	37.1	27.64
EES12241	Sorghum	nucleus	36.13	27.45
Os02t0565000-01	Rice	nucleus	35.48	26.25
Zm00001d016876_P001	Maize	nucleus, plastid	33.87	26.12
HORVU6Hr1G050140.1	Barley	nucleus, plastid	34.84	25.84
TraesCS6D01G184500.2	Wheat	nucleus	34.19	25.48
TraesCS6B01G230000.1	Wheat	nucleus	33.87	25.24
KXG30464	Sorghum	nucleus, plastid	33.23	24.41
Zm00001d010753_P001	Maize	nucleus	23.87	22.56
Bra001951.1-P	Field mustard	nucleus	18.39	16.81
HORVU2Hr1G077940.1	Barley	cytosol, nucleus, plastid	11.94	16.52
Zm00001d042917_P001	Maize	golgi, plasma membrane	27.1	12.65

Protein Annotations

EnsemblPlants:Bra021534.1	EnsemblPlants:Bra021534.1-P	EnsemblPlantsGene:Bra021534	ncoils:Coil	PANTHER:PTHR31307	PFAM:PF13837
SEG:seg	UniParc:UPI0002544386	UniProt:M4DYD8	MapMan:15.5.20	:	:

Description

AT3G14180 (E=1e-053) | transcription factor

Coordinates

chrA01:+:24698094..24699026

Molecular Weight (calculated)

34484.7 Da

IEP (calculated)

9.987

GRAVY (calculated)

-0.954

Length

310 amino acids

Sequence
(BLAST)

001: MADDEDQIRS QSDSPDPSSS SPPPSGKVTV TVAFPGPPQK TPDASPLALL PIKSSGGGGR EDCWSEKATG VLIDAWGEIH LELSRGNLKQ KHWEKVAETV
101: RSKEEDNGKT PKTDVQCKNR IDTVKKKYKQ EKLRSGRSSW VFFDKLDRLI GSTAKISPAP PPSGLGGGGG LHNIPMGIPM GRGLNLYHQQ GKAETPRFGG
201: TASESKRWPL RRKRNVSDSH SEDSGGDDSL PPPPPPLPLS KRGNKWREVS SAIMRFGEAY EQIENAKLQQ VVEMEKERLR FLKELESQRR HFFVKFQFEL
301: SQQREENGKH

Best Arabidopsis Sequence Match ( AT3G14180.1 )
(BLAST)

001: MEDDEDIRSQ GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPGNSSQKD PDALALALLP IQASGGGNNS SGRPTGGGGR EDCWSEAATA VLIDAWGERY
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN

Arabidopsis Description

ASIL2ASIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178V8Z7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.