Factsheet for Bra024434.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000943.1-P
Bra004720.1-P
Bra006453.1-P
Bra013840.1-P
Bra019205.1-P
Bra025179.1-P
Bra036351.1-P
Bra037384.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67620.1	Bra004720.1-P	AT2G42790.1	21798944
AT5G67620.1	Bra025179.1-P	AT3G26030.1	21798944
AT5G67620.1	Bra036351.1-P	AT3G26030.1	21798944
AT5G67620.1	Bra000943.1-P	AT4G01090.1	21798944
AT5G67620.1	Bra037384.1-P	AT4G01090.1	21798944
AT5G67620.1	Bra006453.1-P	AT4G24840.1	21798944
AT5G67620.1	Bra013840.1-P	AT4G24840.1	21798944
AT5G67620.1	Bra019205.1-P	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36508	Canola	nucleus	96.97	96.97
CDY08733	Canola	nucleus	95.15	95.15
AT5G67620.1	Thale cress	nucleus	78.18	70.88
Bra031842.1-P	Field mustard	nucleus	72.12	62.3
Bra037835.1-P	Field mustard	nucleus	67.27	61.33
VIT_00s0802g00020.t01	Wine grape	cytosol	55.15	50.56
KRH58136	Soybean	nucleus	49.7	45.56
PGSC0003DMT400055171	Potato	cytosol	48.48	45.2
Solyc02g092240.2.1	Tomato	cytosol	47.88	45.14
KRH04405	Soybean	cytosol	47.88	44.38
GSMUA_Achr6P24780_001	Banana	cytosol	39.39	32.83
GSMUA_Achr8P31090_001	Banana	cytosol	40.61	32.21
GSMUA_Achr9P18980_001	Banana	nucleus	20.0	32.04
Os03t0200200-01	Rice	cytosol	40.0	30.7
GSMUA_Achr1P22560_001	Banana	cytosol	37.58	30.69
Bra000609.1-P	Field mustard	cytosol	29.09	30.57
Zm00001d048162_P001	Maize	nucleus	38.18	30.14
GSMUA_Achr7P26120_001	Banana	cytosol	36.36	30.0
GSMUA_Achr7P26140_001	Banana	cytosol	31.52	29.71
KXG39943	Sorghum	cytosol	39.39	29.15
TraesCS4B01G260900.1	Wheat	cytosol	39.39	29.15
Zm00001d028118_P001	Maize	cytosol	38.18	29.03
TraesCS4A01G039700.1	Wheat	cytosol	39.39	28.76
TraesCS4D01G260500.1	Wheat	cytosol	38.79	28.32
Bra010130.1-P	Field mustard	nucleus	26.67	27.5
Bra035874.1-P	Field mustard	cytosol	26.06	25.75
Bra027820.1-P	Field mustard	cytosol	26.67	24.86
Bra031717.1-P	Field mustard	cytosol	24.85	24.7
Bra035410.1-P	Field mustard	cytosol	26.06	24.57
Os10t0352000-01	Rice	cytosol	17.58	17.58

Protein Annotations

EnsemblPlants:Bra024434.1	EnsemblPlants:Bra024434.1-P	EnsemblPlantsGene:Bra024434	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005874	InterPro:DUF4228_plant	PANTHER:PTHR33413	PANTHER:PTHR33413:SF1	PFAM:PF14009
SEG:seg	UniParc:UPI000253EEBC	UniProt:M4E6N0	MapMan:35.2	:	:

Description

AT5G67620 (E=9e-028) | unknown protein

Coordinates

chrA06:+:15766802..15767714

Molecular Weight (calculated)

17884.5 Da

IEP (calculated)

10.258

GRAVY (calculated)

-0.667

Length

165 amino acids

Sequence
(BLAST)

001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDVMKSNPG HYVAVVVTSP TLRNEKGSPL KQLKLLQVLK EFATKKCVKL GKLLKEGGGL ELKKKMKKHR
101: KKADQDHNGR VNPNSDLDPK EDVSNDDTVA GDISGNGFMR RSYGGGRGGG GWRPALHSIP ELGSS

Best Arabidopsis Sequence Match ( AT5G67620.1 )
(BLAST)

001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS

Arabidopsis Description

At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.