Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08733 | Canola | nucleus | 72.53 | 80.0 |
| Bra024434.1-P | Field mustard | nucleus | 70.88 | 78.18 |
| CDY36508 | Canola | nucleus | 70.33 | 77.58 |
| VIT_00s0802g00020.t01 | Wine grape | cytosol | 58.24 | 58.89 |
| KRH04405 | Soybean | cytosol | 50.55 | 51.69 |
| Solyc02g092240.2.1 | Tomato | cytosol | 49.45 | 51.43 |
| PGSC0003DMT400055171 | Potato | cytosol | 50.0 | 51.41 |
| KRH58136 | Soybean | nucleus | 50.55 | 51.11 |
| GSMUA_Achr9P18980_001 | Banana | nucleus | 25.82 | 45.63 |
| GSMUA_Achr7P26140_001 | Banana | cytosol | 37.91 | 39.43 |
| GSMUA_Achr8P31090_001 | Banana | cytosol | 45.05 | 39.42 |
| GSMUA_Achr6P24780_001 | Banana | cytosol | 42.31 | 38.89 |
| GSMUA_Achr7P26120_001 | Banana | cytosol | 42.31 | 38.5 |
| Os03t0200200-01 | Rice | cytosol | 45.05 | 38.14 |
| GSMUA_Achr1P22560_001 | Banana | cytosol | 41.21 | 37.13 |
| Zm00001d048162_P001 | Maize | nucleus | 42.31 | 36.84 |
| AT5G62900.1 | Thale cress | cytosol | 32.42 | 36.65 |
| AT5G50090.1 | Thale cress | cytosol | 31.87 | 36.48 |
| Zm00001d028118_P001 | Maize | cytosol | 42.31 | 35.48 |
| TraesCS4B01G260900.1 | Wheat | cytosol | 43.41 | 35.43 |
| KXG39943 | Sorghum | cytosol | 42.86 | 34.98 |
| TraesCS4A01G039700.1 | Wheat | cytosol | 43.41 | 34.96 |
| TraesCS4D01G260500.1 | Wheat | cytosol | 42.86 | 34.51 |
| AT1G60010.1 | Thale cress | cytosol | 31.32 | 32.95 |
| AT1G10530.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 29.12 | 31.93 |
| Os10t0352000-01 | Rice | cytosol | 22.53 | 24.85 |
Protein Annotations
| MapMan:35.2 | EntrezGene:836898 | ProteinID:AED98368.1 | EMBL:AK228248 | ArrayExpress:AT5G67620 | EnsemblPlantsGene:AT5G67620 |
| RefSeq:AT5G67620 | TAIR:AT5G67620 | RefSeq:AT5G67620-TAIR-G | EnsemblPlants:AT5G67620.1 | TAIR:AT5G67620.1 | ProteinID:BAB08470.1 |
| EMBL:BT009721 | InterPro:DUF4228_plant | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 |
| GO:GO:0005874 | RefSeq:NP_201563.1 | PFAM:PF14009 | PO:PO:0000293 | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF1 |
| UniProt:Q9FJW1 | UniParc:UPI000009E70B | SEG:seg | : | : | : |
Description
At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
Coordinates
chr5:-:26964551..26966010
Molecular Weight (calculated)
19707.6 Da
IEP (calculated)
10.021
GRAVY (calculated)
-0.619
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.