Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035410.1-P | Field mustard | cytosol | 82.08 | 81.14 |
| CDY24507 | Canola | cytosol | 82.08 | 81.14 |
| CDY69854 | Canola | cytosol | 77.46 | 76.14 |
| CDY30923 | Canola | cytosol | 75.14 | 73.45 |
| Bra027820.1-P | Field mustard | cytosol | 74.57 | 72.88 |
| CDY70563 | Canola | cytosol | 73.41 | 70.95 |
| AT1G10530.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 61.27 | 63.86 |
| PGSC0003DMT400040233 | Potato | mitochondrion | 56.07 | 58.79 |
| Solyc05g006030.2.1 | Tomato | cytosol | 56.07 | 58.43 |
| KRH69484 | Soybean | cytosol | 57.23 | 57.56 |
| VIT_01s0026g00730.t01 | Wine grape | cytosol | 57.8 | 57.14 |
| KRH74672 | Soybean | cytosol | 55.49 | 55.81 |
| KRG99257 | Soybean | cytosol | 49.71 | 49.43 |
| KRH45741 | Soybean | cytosol | 49.71 | 48.86 |
| AT5G62900.1 | Thale cress | cytosol | 41.62 | 44.72 |
| KXG30786 | Sorghum | cytosol | 42.77 | 44.05 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 34.68 | 43.8 |
| AT5G50090.1 | Thale cress | cytosol | 39.88 | 43.4 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 41.04 | 42.52 |
| TraesCS7D01G194000.1 | Wheat | cytosol | 37.57 | 40.12 |
| TraesCS7B01G098100.1 | Wheat | cytosol | 38.15 | 39.76 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 41.62 | 39.56 |
| Zm00001d017998_P001 | Maize | cytosol | 39.31 | 39.31 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 39.88 | 39.2 |
| KXG19676 | Sorghum | cytosol | 39.31 | 39.08 |
| TraesCS7A01G192700.1 | Wheat | cytosol | 37.57 | 38.92 |
| TraesCS6D01G288900.1 | Wheat | cytosol | 39.88 | 38.33 |
| TraesCS6B01G339300.1 | Wheat | cytosol | 39.88 | 38.33 |
| TraesCS6A01G309500.1 | Wheat | cytosol | 39.31 | 37.78 |
| Os06t0236300-01 | Rice | cytosol | 40.46 | 37.04 |
| Zm00001d052277_P001 | Maize | cytosol | 35.84 | 36.9 |
| Os02t0741700-01 | Rice | cytosol | 34.68 | 36.14 |
| Zm00001d037251_P001 | Maize | cytosol | 37.57 | 35.91 |
| EER96686 | Sorghum | cytosol | 36.99 | 35.75 |
| Zm00001d044783_P001 | Maize | cytosol | 35.26 | 35.06 |
| HORVU6Hr1G076380.4 | Barley | cytosol | 34.68 | 34.88 |
| Zm00001d020348_P001 | Maize | cytosol | 36.99 | 34.78 |
| OQU80443 | Sorghum | cytosol | 36.99 | 34.59 |
| Zm00001d032324_P001 | Maize | cytosol | 36.99 | 34.41 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 36.42 | 34.05 |
| TraesCS5A01G200100.1 | Wheat | cytosol | 38.73 | 34.01 |
| TraesCS5B01G198500.1 | Wheat | cytosol | 39.31 | 34.0 |
| Os09t0381600-01 | Rice | cytosol | 40.46 | 33.65 |
| TraesCS5D01G205700.1 | Wheat | cytosol | 38.73 | 33.5 |
| HORVU5Hr1G059690.7 | Barley | nucleus | 38.73 | 33.0 |
| TraesCS5B01G198400.1 | Wheat | cytosol | 38.15 | 33.0 |
| TraesCS2B01G099400.1 | Wheat | cytosol | 38.15 | 32.67 |
| HORVU7Hr1G039390.1 | Barley | cytosol | 31.21 | 32.53 |
| TraesCS2A01G084700.1 | Wheat | cytosol | 37.57 | 32.5 |
| TraesCS2D01G082500.1 | Wheat | cytosol | 36.42 | 32.31 |
| TraesCS2D01G082600.1 | Wheat | cytosol | 37.57 | 32.18 |
| Os08t0420700-01 | Rice | cytosol, nucleus, plastid | 34.68 | 31.75 |
| HORVU7Hr1G039360.7 | Barley | cytosol | 31.79 | 31.61 |
| TraesCS2D01G082300.1 | Wheat | cytosol | 36.42 | 31.5 |
| AT5G67620.1 | Thale cress | nucleus | 32.95 | 31.32 |
| HORVU2Hr1G013820.4 | Barley | cytosol | 36.42 | 31.19 |
| TraesCS2D01G082400.1 | Wheat | cytosol, mitochondrion, nucleus | 35.84 | 31.16 |
| TraesCS2B01G099100.1 | Wheat | nucleus | 35.84 | 31.0 |
| TraesCS2A01G084400.1 | Wheat | cytosol | 35.84 | 31.0 |
| TraesCS2A01G084600.1 | Wheat | cytosol | 35.26 | 30.81 |
| TraesCS2A01G084500.1 | Wheat | cytosol | 36.42 | 30.73 |
| TraesCS2B01G099200.1 | Wheat | nucleus | 35.26 | 30.5 |
| TraesCS2B01G098900.1 | Wheat | nucleus, plastid | 23.12 | 22.1 |
Protein Annotations
| MapMan:35.2 | EntrezGene:842295 | UniProt:A0A178W2T9 | ProteinID:AAD14477.1 | ProteinID:AEE33650.1 | EMBL:AK117703 |
| ArrayExpress:AT1G60010 | EnsemblPlantsGene:AT1G60010 | RefSeq:AT1G60010 | TAIR:AT1G60010 | RefSeq:AT1G60010-TAIR-G | EnsemblPlants:AT1G60010.1 |
| TAIR:AT1G60010.1 | EMBL:BT004978 | ncoils:Coil | InterPro:DUF4228_plant | RefSeq:NP_564752.1 | ProteinID:OAP12829.1 |
| PFAM:PF14009 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF4 | UniProt:Q9ZUJ2 | UniParc:UPI000000C525 | SEG:seg |
Description
D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
Coordinates
chr1:-:22095285..22096620
Molecular Weight (calculated)
19604.5 Da
IEP (calculated)
10.319
GRAVY (calculated)
-0.847
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.