Factsheet for Os06t0236300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0471300-01
Os08t0497900-01
Os09t0481300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60010.1	Os04t0471300-01	AT4G26455.1	21798944
AT1G60010.1	Os08t0497900-01	AT4G26455.1	21798944
AT1G60010.1	Os09t0481300-01	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G194000.1	Wheat	cytosol	56.61	66.05
TraesCS7B01G098100.1	Wheat	cytosol	57.14	65.06
TraesCS7A01G192700.1	Wheat	cytosol	57.14	64.67
KXG19676	Sorghum	cytosol	56.61	61.49
Zm00001d037251_P001	Maize	cytosol	58.73	61.33
GSMUA_Achr5P23980_001	Banana	cytosol	41.8	57.66
HORVU7Hr1G039390.1	Barley	cytosol	47.09	53.61
HORVU7Hr1G039360.7	Barley	cytosol	47.62	51.72
Zm00001d044783_P001	Maize	cytosol	46.56	50.57
Os02t0741700-01	Rice	cytosol	43.39	49.4
GSMUA_Achr9P28200_001	Banana	cytosol	43.39	49.1
GSMUA_Achr9P18270_001	Banana	cytosol	44.97	46.7
GSMUA_Achr3P06040_001	Banana	cytosol	42.86	46.02
VIT_01s0026g00730.t01	Wine grape	cytosol	40.21	43.43
GSMUA_Achr3P10380_001	Banana	cytosol, nucleus, plastid	42.33	43.24
KRH74672	Soybean	cytosol	39.15	43.02
KRH69484	Soybean	cytosol	38.62	42.44
PGSC0003DMT400040233	Potato	mitochondrion	37.04	42.42
Os08t0420700-01	Rice	cytosol, nucleus, plastid	42.33	42.33
Os09t0381600-01	Rice	cytosol	46.56	42.31
KRG99257	Soybean	cytosol	38.62	41.95
Solyc05g006030.2.1	Tomato	cytosol	35.98	40.96
KRH45741	Soybean	cytosol	38.1	40.91
AT1G60010.1	Thale cress	cytosol	37.04	40.46
CDY24507	Canola	cytosol	37.04	40.0
Bra035410.1-P	Field mustard	cytosol	37.04	40.0
AT5G62900.1	Thale cress	cytosol	33.86	39.75
CDY30923	Canola	cytosol	37.04	39.55
Solyc06g071320.2.1	Tomato	cytosol	32.28	39.35
PGSC0003DMT400063216	Potato	cytosol	38.62	39.04
Bra027820.1-P	Field mustard	cytosol	36.51	38.98
Solyc03g114020.2.1	Tomato	cytosol	38.1	38.5
Bra010130.1-P	Field mustard	nucleus	32.28	38.12
CDY00334	Canola	nucleus	32.28	38.12
CDX84364	Canola	cytosol	32.28	38.12
CDY69854	Canola	cytosol	35.45	38.07
CDY70563	Canola	cytosol	35.98	37.99
PGSC0003DMT400083024	Potato	cytosol	32.28	37.89
AT5G50090.1	Thale cress	cytosol	31.75	37.74
Bra000609.1-P	Field mustard	cytosol	31.22	37.58
KRH63480	Soybean	cytosol	34.39	37.57
VIT_17s0000g07840.t01	Wine grape	cytosol	36.51	37.5
KRH03351	Soybean	cytosol	35.98	37.36
AT1G10530.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	32.8	37.35
KRH57030	Soybean	cytosol	35.45	37.22
CDY07805	Canola	nucleus	32.28	36.75
CDY21433	Canola	cytosol	30.16	36.31
Bra031717.1-P	Field mustard	cytosol	31.75	36.14
CDY34887	Canola	cytosol	31.75	36.14
KRH54436	Soybean	cytosol	33.86	35.36
Os03t0200200-01	Rice	cytosol	40.21	35.35
Bra035874.1-P	Field mustard	cytosol	31.22	35.33
CDX87268	Canola	cytosol	29.63	35.0
Os10t0352000-01	Rice	cytosol	19.05	21.82

Protein Annotations

EMBL:AK119955	EnsemblPlants:Os06t0236300-01	EnsemblPlantsGene:Os06g0236300	EntrezGene:4340599	InterPro:DUF4228_plant	PANTHER:PTHR33413
PANTHER:PTHR33413:SF6	PFAM:PF14009	ProteinID:BAD37937.1	ProteinID:BAF19157.1	ProteinID:BAS96959.1	RefSeq:XP_015641587.1
SEG:seg	UniParc:UPI00004263F6	UniProt:Q67V82	MapMan:35.2	:	:

Description

Conserved hypothetical protein. (Os06t0236300-01)

Coordinates

chr6:+:7093925..7096087

Molecular Weight (calculated)

20689.5 Da

IEP (calculated)

10.897

GRAVY (calculated)

-0.714

Length

189 amino acids

Sequence
(BLAST)

001: MGNCQAAEAA TVVVQHPGGR VERLYWATTA AEVMRANPGH YVALVTLRVA EEKRPPPPPP PPPARAERRG TGTGTVRVTR VKLLKPRDTL LLGQAYRLIT
101: VDEVTRALQA KKEEKSRRAA AQHHHLESKP AAAAAVAAGV RINSGGDDHT QLDENLDQHD RDGQRSSSAT HSRHRQWRPS LHSIAEVRS

Best Arabidopsis Sequence Match ( AT1G60010.1 )
(BLAST)

001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS

Arabidopsis Description

D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.