Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G60010.1 | CDX89333 | AT4G26455.1 | 21798944 |
| AT1G60010.1 | CDX94330 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70563 | Canola | cytosol | 94.35 | 93.3 |
| AT1G60010.1 | Thale cress | cytosol | 73.45 | 75.14 |
| CDY24507 | Canola | cytosol | 70.62 | 71.43 |
| CDY69854 | Canola | cytosol | 70.62 | 71.02 |
| CDY07805 | Canola | nucleus | 53.11 | 56.63 |
| CDY34887 | Canola | cytosol | 53.11 | 56.63 |
| Solyc05g006030.2.1 | Tomato | cytosol | 51.98 | 55.42 |
| PGSC0003DMT400040233 | Potato | mitochondrion | 51.41 | 55.15 |
| VIT_01s0026g00730.t01 | Wine grape | cytosol | 52.54 | 53.14 |
| KRH69484 | Soybean | cytosol | 50.28 | 51.74 |
| KRH74672 | Soybean | cytosol | 49.72 | 51.16 |
| KRG99257 | Soybean | cytosol | 46.89 | 47.7 |
| KRH45741 | Soybean | cytosol | 46.89 | 47.16 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 32.77 | 42.34 |
| KXG30786 | Sorghum | cytosol | 40.11 | 42.26 |
| TraesCS7D01G194000.1 | Wheat | cytosol | 38.42 | 41.98 |
| CDX84364 | Canola | cytosol | 37.29 | 41.25 |
| CDY00334 | Canola | nucleus | 37.29 | 41.25 |
| CDY21433 | Canola | cytosol | 36.16 | 40.76 |
| TraesCS7B01G098100.1 | Wheat | cytosol | 37.85 | 40.36 |
| TraesCS6A01G309500.1 | Wheat | cytosol | 40.68 | 40.0 |
| TraesCS7A01G192700.1 | Wheat | cytosol | 37.29 | 39.52 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 37.29 | 39.52 |
| KXG19676 | Sorghum | cytosol | 37.29 | 37.93 |
| Zm00001d017998_P001 | Maize | cytosol | 36.72 | 37.57 |
| CDX87268 | Canola | cytosol | 33.9 | 37.5 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 38.42 | 37.36 |
| Os02t0741700-01 | Rice | cytosol | 35.03 | 37.35 |
| TraesCS6D01G288900.1 | Wheat | cytosol | 37.85 | 37.22 |
| TraesCS6B01G339300.1 | Wheat | cytosol | 37.85 | 37.22 |
| Os06t0236300-01 | Rice | cytosol | 39.55 | 37.04 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 36.72 | 36.93 |
| Zm00001d052277_P001 | Maize | cytosol | 35.03 | 36.9 |
| OQU80443 | Sorghum | cytosol | 37.29 | 35.68 |
| HORVU6Hr1G076380.4 | Barley | cytosol | 34.46 | 35.47 |
| EER96686 | Sorghum | cytosol | 35.59 | 35.2 |
| Zm00001d032324_P001 | Maize | cytosol | 36.72 | 34.95 |
| Zm00001d037251_P001 | Maize | cytosol | 35.59 | 34.81 |
| Zm00001d020348_P001 | Maize | cytosol | 36.16 | 34.78 |
| TraesCS5A01G200100.1 | Wheat | cytosol | 38.42 | 34.52 |
| Zm00001d044783_P001 | Maize | cytosol | 33.9 | 34.48 |
| TraesCS5B01G198500.1 | Wheat | cytosol | 38.42 | 34.0 |
| TraesCS5D01G205700.1 | Wheat | cytosol | 38.42 | 34.0 |
| HORVU5Hr1G059690.7 | Barley | nucleus | 38.98 | 33.99 |
| Os09t0381600-01 | Rice | cytosol | 39.55 | 33.65 |
| Os08t0420700-01 | Rice | cytosol, nucleus, plastid | 35.59 | 33.33 |
| TraesCS5B01G198400.1 | Wheat | cytosol | 37.29 | 33.0 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 34.46 | 32.97 |
| TraesCS2D01G082500.1 | Wheat | cytosol | 36.16 | 32.82 |
| TraesCS2A01G084700.1 | Wheat | cytosol | 36.72 | 32.5 |
| HORVU7Hr1G039360.7 | Barley | cytosol | 31.64 | 32.18 |
| TraesCS2B01G099400.1 | Wheat | cytosol | 36.72 | 32.18 |
| TraesCS2D01G082600.1 | Wheat | cytosol | 36.72 | 32.18 |
| HORVU7Hr1G039390.1 | Barley | cytosol | 29.94 | 31.93 |
| CDY18668 | Canola | nucleus | 31.64 | 31.28 |
| TraesCS2D01G082300.1 | Wheat | cytosol | 35.03 | 31.0 |
| TraesCS2A01G084400.1 | Wheat | cytosol | 35.03 | 31.0 |
| TraesCS2A01G084600.1 | Wheat | cytosol | 34.46 | 30.81 |
| TraesCS2D01G082400.1 | Wheat | cytosol, mitochondrion, nucleus | 34.46 | 30.65 |
| TraesCS2B01G099100.1 | Wheat | nucleus | 34.46 | 30.5 |
| CDX81304 | Canola | nucleus | 31.64 | 30.43 |
| TraesCS2A01G084500.1 | Wheat | cytosol | 35.03 | 30.24 |
| HORVU2Hr1G013820.4 | Barley | cytosol | 34.46 | 30.2 |
| TraesCS2B01G099200.1 | Wheat | nucleus | 33.9 | 30.0 |
| CDY43585 | Canola | nucleus | 28.81 | 28.98 |
| CDY37844 | Canola | nucleus | 28.81 | 28.49 |
| CDY08733 | Canola | nucleus | 25.99 | 27.88 |
| CDY36508 | Canola | nucleus | 25.42 | 27.27 |
| TraesCS2B01G098900.1 | Wheat | nucleus, plastid | 23.73 | 23.2 |
Protein Annotations
| EnsemblPlants:CDY30923 | EnsemblPlantsGene:GSBRNA2T00046467001 | InterPro:DUF4228_plant | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF4 | PFAM:PF14009 |
| ProteinID:CDY30923 | ProteinID:CDY30923.1 | SEG:seg | UniParc:UPI0004EF28D0 | UniProt:A0A078H243 | MapMan:35.2 |
Description
BnaC09g14830DBnaC09g14830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H243]
Coordinates
chrLK032263:-:476565..477738
Molecular Weight (calculated)
19924.8 Da
IEP (calculated)
10.007
GRAVY (calculated)
-0.760
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAVDAA ALVVQHPNGK LDRYYGPVPV AEIMRMYPGH YVSLIIPLPE TNVPATTTKT VEDDKSERRV VKFTRVKLLR PTESLVLGHA YRLITSQEVM
101: KVLRAKKYAK TKKHQRETTE EKNPTSLEKK VAEESENNQN QNLETNDEKQ RAVLTSSGSS KSKTWRPSLQ SISEATS
101: KVLRAKKYAK TKKHQRETTE EKNPTSLEKK VAEESENNQN QNLETNDEKQ RAVLTSSGSS KSKTWRPSLQ SISEATS
001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
Arabidopsis Description
D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.