Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d003334_P001 | |
| Zm00001d005997_P002 | |
| Zm00001d020879_P001 | |
| Zm00001d025667_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER96686 | Sorghum | cytosol | 80.43 | 82.68 |
| TraesCS5A01G200100.1 | Wheat | cytosol | 68.48 | 63.96 |
| TraesCS5B01G198500.1 | Wheat | cytosol | 67.93 | 62.5 |
| TraesCS5D01G205700.1 | Wheat | cytosol | 67.39 | 62.0 |
| Os09t0381600-01 | Rice | cytosol | 69.57 | 61.54 |
| TraesCS5B01G198400.1 | Wheat | cytosol | 66.85 | 61.5 |
| HORVU5Hr1G059690.7 | Barley | nucleus | 66.85 | 60.59 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 41.3 | 55.47 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 47.83 | 52.69 |
| Zm00001d032324_P001 | Maize | cytosol | 51.09 | 50.54 |
| Zm00001d017998_P001 | Maize | cytosol | 45.65 | 48.55 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 47.28 | 47.8 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 47.28 | 47.03 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 44.57 | 46.59 |
| Zm00001d052277_P001 | Maize | cytosol | 42.39 | 46.43 |
| Zm00001d044783_P001 | Maize | cytosol | 41.85 | 44.25 |
| PGSC0003DMT400040233 | Potato | mitochondrion | 39.67 | 44.24 |
| Zm00001d037251_P001 | Maize | cytosol | 43.48 | 44.2 |
| Solyc05g006030.2.1 | Tomato | cytosol | 39.67 | 43.98 |
| KRG99257 | Soybean | cytosol | 40.22 | 42.53 |
| KRH69484 | Soybean | cytosol | 39.67 | 42.44 |
| KRH45741 | Soybean | cytosol | 40.22 | 42.05 |
| KRH74672 | Soybean | cytosol | 39.13 | 41.86 |
| AT5G62900.1 | Thale cress | cytosol | 35.87 | 40.99 |
| VIT_01s0026g00730.t01 | Wine grape | cytosol | 38.59 | 40.57 |
| KRH57030 | Soybean | cytosol | 39.67 | 40.56 |
| VIT_17s0000g07840.t01 | Wine grape | cytosol | 39.67 | 39.67 |
| KRH03351 | Soybean | cytosol | 39.13 | 39.56 |
| KRH63480 | Soybean | cytosol | 36.96 | 39.31 |
| PGSC0003DMT400063216 | Potato | cytosol | 39.67 | 39.04 |
| AT5G50090.1 | Thale cress | cytosol | 33.7 | 38.99 |
| Bra035410.1-P | Field mustard | cytosol | 36.96 | 38.86 |
| CDY24507 | Canola | cytosol | 36.96 | 38.86 |
| Bra010130.1-P | Field mustard | nucleus | 33.7 | 38.75 |
| CDY00334 | Canola | nucleus | 33.7 | 38.75 |
| CDX84364 | Canola | cytosol | 33.7 | 38.75 |
| Solyc06g071320.2.1 | Tomato | cytosol | 32.61 | 38.71 |
| PGSC0003DMT400083024 | Potato | cytosol | 33.7 | 38.51 |
| CDY69854 | Canola | cytosol | 36.41 | 38.07 |
| KRH54436 | Soybean | cytosol | 36.96 | 37.57 |
| CDY07805 | Canola | nucleus | 33.7 | 37.35 |
| AT1G60010.1 | Thale cress | cytosol | 34.78 | 36.99 |
| Bra000609.1-P | Field mustard | cytosol | 31.52 | 36.94 |
| Solyc03g114020.2.1 | Tomato | cytosol | 37.5 | 36.9 |
| Bra031717.1-P | Field mustard | cytosol | 33.15 | 36.75 |
| CDY21433 | Canola | cytosol | 30.98 | 36.31 |
| Bra027820.1-P | Field mustard | cytosol | 34.78 | 36.16 |
| CDY30923 | Canola | cytosol | 34.78 | 36.16 |
| AT1G10530.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 32.61 | 36.14 |
| CDY34887 | Canola | cytosol | 32.61 | 36.14 |
| Bra035874.1-P | Field mustard | cytosol | 32.07 | 35.33 |
| CDY70563 | Canola | cytosol | 34.24 | 35.2 |
| CDX87268 | Canola | cytosol | 29.89 | 34.38 |
| Zm00001d028118_P001 | Maize | cytosol | 36.41 | 30.88 |
| Zm00001d048162_P001 | Maize | nucleus | 34.78 | 30.62 |
Protein Annotations
| EMBL:BT060484 | EMBL:EU955764 | EnsemblPlants:Zm00001d020348_P001 | EnsemblPlants:Zm00001d020348_T001 | EnsemblPlantsGene:Zm00001d020348 | EntrezGene:100275410 |
| InterPro:DUF4228_plant | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF7 | PFAM:PF14009 | ProteinID:ONM54749.1 | SEG:seg |
| UniParc:UPI000182B69E | UniProt:B6SSP9 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr7:+:108322505..108323755
Molecular Weight (calculated)
19630.2 Da
IEP (calculated)
10.763
GRAVY (calculated)
-0.580
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAAEAA AVIIQHPGGK VDRLYWSTTA AEVMRNNPGH YVALVILRVP ADNKPAAAAA AAAGDAAASS GPGSGGAKIT RVKLLKPKDT LLLGQVYRLI
101: TAQEVTKAVR ARKNEKMQRC EAIRQQHEQL RRGDGAHQSS SSQDGKQDKD RHRGRGRHWR PVLQSISESA SQSSSSIVSE SATS
101: TAQEVTKAVR ARKNEKMQRC EAIRQQHEQL RRGDGAHQSS SSQDGKQDKD RHRGRGRHWR PVLQSISESA SQSSSSIVSE SATS
001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
Arabidopsis Description
D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.