CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES14314
OQU81760

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60010.1	EER96942	AT4G26455.1	21798944
AT1G60010.1	EES14314	AT4G26455.1	21798944
AT1G60010.1	OQU81760	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020348_P001	Maize	cytosol	82.68	80.43
Os09t0381600-01	Rice	cytosol	72.07	62.02
TraesCS5B01G198500.1	Wheat	cytosol	66.48	59.5
TraesCS5D01G205700.1	Wheat	cytosol	65.92	59.0
TraesCS5A01G200100.1	Wheat	cytosol	64.8	58.88
HORVU5Hr1G059690.7	Barley	nucleus	66.48	58.62
TraesCS5B01G198400.1	Wheat	cytosol	65.36	58.5
GSMUA_Achr5P23980_001	Banana	cytosol	43.02	56.2
GSMUA_Achr9P28200_001	Banana	cytosol	49.16	52.69
OQU80443	Sorghum	cytosol	53.07	51.35
KXG30786	Sorghum	cytosol	48.04	51.19
GSMUA_Achr9P18270_001	Banana	cytosol	49.16	48.35
GSMUA_Achr3P06040_001	Banana	cytosol	46.37	47.16
KXG19676	Sorghum	cytosol	45.25	46.55
GSMUA_Achr3P10380_001	Banana	cytosol, nucleus, plastid	46.93	45.41
KRH69484	Soybean	cytosol	40.78	42.44
PGSC0003DMT400040233	Potato	mitochondrion	39.11	42.42
Solyc05g006030.2.1	Tomato	cytosol	39.11	42.17
KRH74672	Soybean	cytosol	40.22	41.86
AT5G50090.1	Thale cress	cytosol	36.31	40.88
KRG99257	Soybean	cytosol	39.66	40.8
VIT_01s0026g00730.t01	Wine grape	cytosol	39.66	40.57
KRH57030	Soybean	cytosol	40.78	40.56
KRH45741	Soybean	cytosol	39.66	40.34
KRH03351	Soybean	cytosol	40.78	40.11
Solyc06g071320.2.1	Tomato	cytosol	34.64	40.0
KRH63480	Soybean	cytosol	38.55	39.88
PGSC0003DMT400083024	Potato	cytosol	35.75	39.75
PGSC0003DMT400063216	Potato	cytosol	40.78	39.04
CDY07805	Canola	nucleus	35.75	38.55
CDY21433	Canola	cytosol	33.52	38.22
Bra000609.1-P	Field mustard	cytosol	33.52	38.22
Bra031717.1-P	Field mustard	cytosol	35.2	37.95
AT5G62900.1	Thale cress	cytosol	34.08	37.89
KRH54436	Soybean	cytosol	37.99	37.57
CDY00334	Canola	nucleus	33.52	37.5
CDX84364	Canola	cytosol	33.52	37.5
VIT_17s0000g07840.t01	Wine grape	cytosol	38.55	37.5
Bra010130.1-P	Field mustard	nucleus	33.52	37.5
CDY69854	Canola	cytosol	36.87	37.5
AT1G10530.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	34.64	37.35
CDY34887	Canola	cytosol	34.64	37.35
CDY24507	Canola	cytosol	36.31	37.14
Bra035410.1-P	Field mustard	cytosol	36.31	37.14
AT1G60010.1	Thale cress	cytosol	35.75	36.99
Solyc03g114020.2.1	Tomato	cytosol	38.55	36.9
Bra027820.1-P	Field mustard	cytosol	35.75	36.16
CDY70563	Canola	cytosol	35.75	35.75
CDY30923	Canola	cytosol	35.2	35.59
Bra035874.1-P	Field mustard	cytosol	32.4	34.73
CDX87268	Canola	cytosol	28.49	31.88
KXG39943	Sorghum	cytosol	35.75	28.7

Protein Annotations

EnsemblPlants:EER96686	EnsemblPlantsGene:SORBI_3002G189900	EntrezGene:8056202	InterPro:DUF4228_plant	PANTHER:PTHR33413	PANTHER:PTHR33413:SF7
PFAM:PF14009	ProteinID:EER96686	ProteinID:EER96686.1	RefSeq:XP_002460165.1	SEG:seg	UniParc:UPI0001A83ABD
UniProt:C5XBG6	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:57605971..57607191

Molecular Weight (calculated)

19188.6 Da

IEP (calculated)

10.508

GRAVY (calculated)

-0.704

Length

179 amino acids

Sequence
(BLAST)

001: MGNCQAAEVS AVIIQHPGGK VDRLYWSTTA AEVMRNNPGH YVALVILRVP ADNSKPAAGD AGAASSGGGG GAKITRVKLL KPKDTLLLGQ VYRLITAQEV
101: TKALRARKNE KMQRCEAIRQ QHEQLRRGDD GADQSSSNQD GKQDKDRHRG RGRNWRPALQ SISEAASQSS SSVSESAAS

Best Arabidopsis Sequence Match ( AT1G60010.1 )
(BLAST)

001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS

Arabidopsis Description

D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.