Factsheet for VIT_17s0000g07840.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63480	Soybean	cytosol	54.35	57.8
KRH54436	Soybean	cytosol	53.8	54.7
KRH03351	Soybean	cytosol	52.72	53.3
KRH57030	Soybean	cytosol	51.63	52.78
AT5G50090.1	Thale cress	cytosol	45.11	52.2
VIT_01s0026g00730.t01	Wine grape	cytosol	48.91	51.43
Bra000609.1-P	Field mustard	cytosol	42.93	50.32
CDY21433	Canola	cytosol	42.93	50.32
Solyc03g114020.2.1	Tomato	cytosol	51.09	50.27
PGSC0003DMT400063216	Potato	cytosol	50.0	49.2
Solyc06g071320.2.1	Tomato	cytosol	41.3	49.03
GSMUA_Achr5P23980_001	Banana	cytosol	35.87	48.18
PGSC0003DMT400083024	Potato	cytosol	41.3	47.2
Bra010130.1-P	Field mustard	nucleus	40.22	46.25
CDY00334	Canola	nucleus	40.22	46.25
AT5G62900.1	Thale cress	cytosol	40.22	45.96
CDX84364	Canola	cytosol	39.67	45.62
GSMUA_Achr3P06040_001	Banana	cytosol	42.93	44.89
GSMUA_Achr9P28200_001	Banana	cytosol	39.67	43.71
KXG30786	Sorghum	cytosol	38.59	42.26
Zm00001d017998_P001	Maize	cytosol	39.67	42.2
KXG19676	Sorghum	cytosol	39.13	41.38
Bra035874.1-P	Field mustard	cytosol	37.5	41.32
TraesCS7D01G194000.1	Wheat	cytosol	35.87	40.74
TraesCS7A01G192700.1	Wheat	cytosol	36.41	40.12
GSMUA_Achr9P18270_001	Banana	cytosol	39.67	40.11
Zm00001d037251_P001	Maize	cytosol	39.13	39.78
TraesCS7B01G098100.1	Wheat	cytosol	35.87	39.76
Zm00001d020348_P001	Maize	cytosol	39.67	39.67
GSMUA_Achr3P10380_001	Banana	cytosol, nucleus, plastid	39.67	39.46
OQU80443	Sorghum	cytosol	39.67	39.46
TraesCS6A01G309500.1	Wheat	cytosol	38.04	38.89
EER96686	Sorghum	cytosol	37.5	38.55
TraesCS6B01G339300.1	Wheat	cytosol	37.5	38.33
TraesCS6D01G288900.1	Wheat	cytosol	37.5	38.33
CDX87268	Canola	cytosol	33.15	38.12
Zm00001d032324_P001	Maize	cytosol	38.04	37.63
TraesCS5A01G200100.1	Wheat	cytosol	39.67	37.06
TraesCS2D01G082500.1	Wheat	cytosol	39.13	36.92
Os06t0236300-01	Rice	cytosol	37.5	36.51
TraesCS5B01G198500.1	Wheat	cytosol	39.67	36.5
TraesCS5D01G205700.1	Wheat	cytosol	39.13	36.0
TraesCS5B01G198400.1	Wheat	cytosol	39.13	36.0
HORVU5Hr1G059690.7	Barley	nucleus	39.67	35.96
TraesCS2A01G084600.1	Wheat	cytosol	38.59	35.86
VIT_00s0802g00020.t01	Wine grape	cytosol	34.78	35.56
Os02t0741700-01	Rice	cytosol	32.07	35.54
HORVU6Hr1G076380.4	Barley	cytosol	33.15	35.47
Zm00001d052277_P001	Maize	cytosol	32.07	35.12
Os09t0381600-01	Rice	cytosol	39.67	35.1
Os08t0420700-01	Rice	cytosol, nucleus, plastid	35.87	34.92
TraesCS2A01G084500.1	Wheat	cytosol	38.59	34.63
HORVU7Hr1G039390.1	Barley	cytosol	30.98	34.34
TraesCS2B01G099400.1	Wheat	cytosol	37.5	34.16
TraesCS2D01G082300.1	Wheat	cytosol	36.96	34.0
Zm00001d044783_P001	Maize	cytosol	32.07	33.91
HORVU2Hr1G013820.4	Barley	cytosol	36.96	33.66
TraesCS2B01G099200.1	Wheat	nucleus	36.41	33.5
TraesCS2D01G082600.1	Wheat	cytosol	36.41	33.17
TraesCS2D01G082400.1	Wheat	cytosol, mitochondrion, nucleus	35.87	33.17
TraesCS2B01G099100.1	Wheat	nucleus	35.87	33.0
TraesCS2A01G084700.1	Wheat	cytosol	35.87	33.0
TraesCS2A01G084400.1	Wheat	cytosol	35.87	33.0
HORVU7Hr1G039360.7	Barley	cytosol	30.98	32.76
TraesCS2B01G098900.1	Wheat	nucleus, plastid	25.0	25.41

Protein Annotations

ArrayExpress:VIT_17s0000g07840	EMBL:FN594950	EnsemblPlants:VIT_17s0000g07840.t01	EnsemblPlantsGene:VIT_17s0000g07840	EntrezGene:100265593	EntrezGene:LOC100265593
InterPro:DUF4228_plant	PANTHER:PTHR33413	PANTHER:PTHR33413:SF5	PFAM:PF14009	ProteinID:CBI15076	ProteinID:CBI15076.3
RefSeq:XP_002283493	RefSeq:XP_002283493.1	SEG:seg	TIGR:TC51792	TIGR:TC56389	unigene:Vvi.7993
UniParc:UPI00019850FB	UniProt:D7SHW6	wikigene:100265593	wikigene:LOC100265593	MapMan:35.2	:

Description

No Description!

Coordinates

chr17:-:8792560..8793901

Molecular Weight (calculated)

20028.3 Da

IEP (calculated)

10.536

GRAVY (calculated)

-0.348

Length

184 amino acids

Sequence
(BLAST)

001: MGNCQAIDAA TLVIQYPCGK ADKLYWPVSA SEVMKMNPGH YVALLITTTL CPTTATTTTA PSSVRITRVK LLRPTDTLVL GQVYRLITAE EVMKALWAKK
101: YAKMKKTQAA SADMAGRVNE KLGGGLEFTV RRSEMEKNHQ MARHERGHER GRGRTAAASA GANSATARPR TWQPSLHSIL EGGS

Best Arabidopsis Sequence Match ( AT1G60010.1 )
(BLAST)

001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS

Arabidopsis Description

D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.