Factsheet for VIT_00s0802g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0017g00210.t01
VIT_06s0080g00770.t01
VIT_12s0142g00610.t01
VIT_16s0115g00130.t01
VIT_17s0000g01560.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67620.1	VIT_06s0080g00770.t01	AT2G42790.1	21798944
AT5G67620.1	VIT_12s0142g00610.t01	AT2G42790.1	21798944
AT5G67620.1	VIT_03s0017g00210.t01	AT3G08530.1	21798944
AT5G67620.1	VIT_16s0115g00130.t01	AT3G08530.1	21798944
AT5G67620.1	VIT_19s0027g01340.t01	AT3G08530.1	21798944
AT5G67620.1	VIT_17s0000g01560.t01	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055171	Potato	cytosol	60.56	61.58
KRH04405	Soybean	cytosol	60.56	61.24
KRH58136	Soybean	nucleus	61.11	61.11
CDY18668	Canola	nucleus	58.89	59.22
Solyc02g092240.2.1	Tomato	cytosol	56.67	58.29
AT5G67620.1	Thale cress	nucleus	58.89	58.24
CDY37844	Canola	nucleus	57.78	58.1
Bra037835.1-P	Field mustard	nucleus	58.33	58.01
CDX81304	Canola	nucleus	58.33	57.07
CDY43585	Canola	nucleus	55.0	56.25
Bra024434.1-P	Field mustard	nucleus	50.56	55.15
CDY08733	Canola	nucleus	50.56	55.15
Bra031842.1-P	Field mustard	nucleus	58.33	54.97
CDY36508	Canola	nucleus	50.0	54.55
GSMUA_Achr9P18980_001	Banana	nucleus	26.67	46.6
GSMUA_Achr6P24780_001	Banana	cytosol	48.33	43.94
GSMUA_Achr7P26120_001	Banana	cytosol	45.0	40.5
GSMUA_Achr7P26140_001	Banana	cytosol	38.33	39.43
GSMUA_Achr8P31090_001	Banana	cytosol	45.0	38.94
Os03t0200200-01	Rice	cytosol	45.0	37.67
Zm00001d048162_P001	Maize	nucleus	43.33	37.32
VIT_01s0026g00730.t01	Wine grape	cytosol	36.11	37.14
GSMUA_Achr1P22560_001	Banana	cytosol	41.67	37.13
Zm00001d028118_P001	Maize	cytosol	44.44	36.87
TraesCS4B01G260900.1	Wheat	cytosol	45.0	36.32
TraesCS4A01G039700.1	Wheat	cytosol	45.0	35.84
KXG39943	Sorghum	cytosol	43.89	35.43
TraesCS4D01G260500.1	Wheat	cytosol	43.89	34.96
VIT_17s0000g07840.t01	Wine grape	cytosol	35.56	34.78
Os10t0352000-01	Rice	cytosol	26.11	28.48

Protein Annotations

EntrezGene:100262782	wikigene:100262782	MapMan:35.2	ProteinID:CBI18811	ProteinID:CBI18811.3	UniProt:D7ST21
InterPro:DUF4228_plant	EMBL:FN595028	EntrezGene:LOC100262782	wikigene:LOC100262782	PFAM:PF14009	PANTHER:PTHR33413
PANTHER:PTHR33413:SF1	TIGR:TC63224	UniParc:UPI0001BE1669	ArrayExpress:VIT_00s0802g00020	EnsemblPlantsGene:VIT_00s0802g00020	EnsemblPlants:VIT_00s0802g00020.t01
RefSeq:XP_002266324	RefSeq:XP_002266324.2	RefSeq:XP_010647353.1	RefSeq:XP_010647354.1	RefSeq:XP_019074188.1	SEG:seg

Description

No Description!

Coordinates

chrUn:-:35515451..35518041

Molecular Weight (calculated)

19227.8 Da

IEP (calculated)

9.755

GRAVY (calculated)

-0.519

Length

180 amino acids

Sequence
(BLAST)

001: MGNCQAAEAA TVVIQHPGNK IERIYWSVSA HEVMTSNPGH YVALVVTSPT AKSENGTPLK QLKLLRPDDT LLIGQVYRLV SFEDVLKEFA AKKSVKLGKL
101: LKERGGLGLE KTKRKHSSGS NSNQNPKPDS YGTVEDEQEV YGLGSNVGSS SSSSRGLGRY QGGGGGQWKP ALQSIAEVGT

Best Arabidopsis Sequence Match ( AT5G67620.1 )
(BLAST)

001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS

Arabidopsis Description

At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.