Factsheet for PGSC0003DMT400055171

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020128
PGSC0003DMT400044692
PGSC0003DMT400067640

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67620.1	PGSC0003DMT400020128	AT2G42790.1	21798944
AT5G67620.1	PGSC0003DMT400044692	AT2G42790.1	21798944
AT5G67620.1	PGSC0003DMT400067640	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g092240.2.1	Tomato	cytosol	76.27	77.14
KRH58136	Soybean	nucleus	62.71	61.67
VIT_00s0802g00020.t01	Wine grape	cytosol	61.58	60.56
KRH04405	Soybean	cytosol	59.89	59.55
CDY18668	Canola	nucleus	53.67	53.07
Bra037835.1-P	Field mustard	nucleus	52.54	51.38
CDX81304	Canola	nucleus	51.98	50.0
AT5G67620.1	Thale cress	nucleus	51.41	50.0
CDY37844	Canola	nucleus	50.28	49.72
CDY43585	Canola	nucleus	48.59	48.86
Bra024434.1-P	Field mustard	nucleus	45.2	48.48
CDY36508	Canola	nucleus	44.63	47.88
GSMUA_Achr9P18980_001	Banana	nucleus	27.68	47.57
CDY08733	Canola	nucleus	44.07	47.27
Bra031842.1-P	Field mustard	nucleus	50.85	47.12
GSMUA_Achr6P24780_001	Banana	cytosol	44.07	39.39
Zm00001d048162_P001	Maize	nucleus	46.33	39.23
GSMUA_Achr7P26120_001	Banana	cytosol	43.5	38.5
GSMUA_Achr7P26140_001	Banana	cytosol	37.29	37.71
GSMUA_Achr8P31090_001	Banana	cytosol	44.07	37.5
Os03t0200200-01	Rice	cytosol	45.2	37.21
Zm00001d028118_P001	Maize	cytosol	45.2	36.87
KXG39943	Sorghum	cytosol	46.33	36.77
PGSC0003DMT400040233	Potato	mitochondrion	33.33	35.76
TraesCS4B01G260900.1	Wheat	cytosol	44.63	35.43
TraesCS4A01G039700.1	Wheat	cytosol	44.63	34.96
TraesCS4D01G260500.1	Wheat	cytosol	44.63	34.96
PGSC0003DMT400083024	Potato	cytosol	31.64	34.78
GSMUA_Achr1P22560_001	Banana	cytosol	39.55	34.65
PGSC0003DMT400063216	Potato	cytosol	33.33	31.55
Os10t0352000-01	Rice	cytosol	23.16	24.85

Protein Annotations

EnsemblPlants:PGSC0003DMT400055171	EnsemblPlantsGene:PGSC0003DMG400021413	EntrezGene:102589633	InterPro:DUF4228_plant	PANTHER:PTHR33413	PANTHER:PTHR33413:SF1
PFAM:PF14009	PGSC:PGSC0003DMG400021413	RefSeq:XP_006363815.1	SEG:seg	UniParc:UPI000295C2EF	UniProt:M1BXG7
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021413]

Coordinates

chr2:+:42652790..42657863

Molecular Weight (calculated)

19114.0 Da

IEP (calculated)

10.198

GRAVY (calculated)

-0.365

Length

177 amino acids

Sequence
(BLAST)

001: MGNCQAAEAA TVVIQHPGNK IERIYWSISA HEVMSSNPGH YVALVITSPT ERTHNGSPVR QLKLLRPGDT LLLGQVYRLI SFEDVLKEFA AKKCVKLGKL
101: LRESGGLVLD SKKISVDSSA VKNKPKMVNG IPAKMEHETY QHGSSSSSSS GQRSMGRHHG GGGQWKPALQ SIAEIGT

Best Arabidopsis Sequence Match ( AT5G67620.1 )
(BLAST)

001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS

Arabidopsis Description

At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.