Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18668 | Canola | nucleus | 81.52 | 83.8 |
| CDY37844 | Canola | nucleus | 73.91 | 75.98 |
| CDY43585 | Canola | nucleus | 71.2 | 74.43 |
| CDY08733 | Canola | nucleus | 61.96 | 69.09 |
| CDY36508 | Canola | nucleus | 61.96 | 69.09 |
| VIT_00s0802g00020.t01 | Wine grape | cytosol | 57.07 | 58.33 |
| KRH04405 | Soybean | cytosol | 51.63 | 53.37 |
| KRH58136 | Soybean | nucleus | 52.17 | 53.33 |
| Solyc02g092240.2.1 | Tomato | cytosol | 50.0 | 52.57 |
| PGSC0003DMT400055171 | Potato | cytosol | 50.0 | 51.98 |
| GSMUA_Achr9P18980_001 | Banana | nucleus | 25.54 | 45.63 |
| GSMUA_Achr8P31090_001 | Banana | cytosol | 45.11 | 39.9 |
| GSMUA_Achr6P24780_001 | Banana | cytosol | 42.93 | 39.9 |
| GSMUA_Achr7P26120_001 | Banana | cytosol | 42.93 | 39.5 |
| GSMUA_Achr7P26140_001 | Banana | cytosol | 37.5 | 39.43 |
| Os03t0200200-01 | Rice | cytosol | 44.57 | 38.14 |
| GSMUA_Achr1P22560_001 | Banana | cytosol | 40.76 | 37.13 |
| Zm00001d048162_P001 | Maize | nucleus | 41.85 | 36.84 |
| Zm00001d028118_P001 | Maize | cytosol | 41.3 | 35.02 |
| TraesCS4B01G260900.1 | Wheat | cytosol | 42.39 | 34.98 |
| TraesCS4A01G039700.1 | Wheat | cytosol | 42.93 | 34.96 |
| TraesCS4D01G260500.1 | Wheat | cytosol | 42.93 | 34.96 |
| CDY00334 | Canola | nucleus | 29.35 | 33.75 |
| KXG39943 | Sorghum | cytosol | 40.22 | 33.18 |
| CDX84364 | Canola | cytosol | 28.8 | 33.12 |
| CDY21433 | Canola | cytosol | 28.26 | 33.12 |
| CDY30923 | Canola | cytosol | 30.43 | 31.64 |
| CDY24507 | Canola | cytosol | 29.89 | 31.43 |
| CDY07805 | Canola | nucleus | 28.26 | 31.33 |
| CDY70563 | Canola | cytosol | 30.43 | 31.28 |
| CDY34887 | Canola | cytosol | 27.72 | 30.72 |
| CDY69854 | Canola | cytosol | 29.35 | 30.68 |
| CDX87268 | Canola | cytosol | 23.91 | 27.5 |
| Os10t0352000-01 | Rice | cytosol | 21.2 | 23.64 |
Protein Annotations
| EnsemblPlants:CDX81304 | EnsemblPlantsGene:GSBRNA2T00134831001 | InterPro:DUF4228_plant | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF1 | PFAM:PF14009 |
| ProteinID:CDX81304 | ProteinID:CDX81304.1 | SEG:seg | UniParc:UPI0004EE7A5E | MapMan:35.2 | : |
Description
BnaC09g07150D
Coordinates
chrLK031824:+:850941..852257
Molecular Weight (calculated)
20078.2 Da
IEP (calculated)
10.234
GRAVY (calculated)
-0.696
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVK ASDVMRSNPD HYVAVVVTSP TLKSEKGSPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLEL KKKKKPRKKT DQEMGRVNPN PNMDPDQKKD GANVNGEVDG DGVMRTSHGG GRGRGRGGGG WRPALHSIPE FGSS
101: LLKEGGGLEL KKKKKPRKKT DQEMGRVNPN PNMDPDQKKD GANVNGEVDG DGVMRTSHGG GRGRGRGGGG WRPALHSIPE FGSS
001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
Arabidopsis Description
At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.