CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37844	Canola	nucleus	96.59	94.97
Bra031842.1-P	Field mustard	nucleus	97.73	90.05
CDY18668	Canola	nucleus	73.3	72.07
CDX81304	Canola	nucleus	74.43	71.2
CDY08733	Canola	nucleus	64.77	69.09
CDY36508	Canola	nucleus	64.2	68.48
VIT_00s0802g00020.t01	Wine grape	cytosol	56.25	55.0
KRH58136	Soybean	nucleus	50.0	48.89
PGSC0003DMT400055171	Potato	cytosol	48.86	48.59
Solyc02g092240.2.1	Tomato	cytosol	48.3	48.57
KRH04405	Soybean	cytosol	48.86	48.31
GSMUA_Achr9P18980_001	Banana	nucleus	27.27	46.6
GSMUA_Achr7P26120_001	Banana	cytosol	44.32	39.0
GSMUA_Achr6P24780_001	Banana	cytosol	43.75	38.89
GSMUA_Achr7P26140_001	Banana	cytosol	38.64	38.86
GSMUA_Achr8P31090_001	Banana	cytosol	45.45	38.46
Zm00001d048162_P001	Maize	nucleus	44.32	37.32
Os03t0200200-01	Rice	cytosol	44.89	36.74
GSMUA_Achr1P22560_001	Banana	cytosol	42.05	36.63
Zm00001d028118_P001	Maize	cytosol	44.32	35.94
CDY21433	Canola	cytosol	30.68	34.39
CDY00334	Canola	nucleus	31.25	34.38
KXG39943	Sorghum	cytosol	43.18	34.08
CDX84364	Canola	cytosol	30.68	33.75
TraesCS4A01G039700.1	Wheat	cytosol	42.61	33.19
TraesCS4B01G260900.1	Wheat	cytosol	41.48	32.74
TraesCS4D01G260500.1	Wheat	cytosol	41.48	32.3
CDY07805	Canola	nucleus	28.98	30.72
CDY34887	Canola	cytosol	28.41	30.12
CDY30923	Canola	cytosol	28.98	28.81
CDY70563	Canola	cytosol	28.98	28.49
CDY69854	Canola	cytosol	28.41	28.41
CDX87268	Canola	cytosol	25.57	28.12
CDY24507	Canola	cytosol	27.84	28.0
Os10t0352000-01	Rice	cytosol	23.3	24.85

Protein Annotations

EnsemblPlants:CDY43585	EnsemblPlantsGene:GSBRNA2T00076891001	InterPro:DUF4228_plant	PANTHER:PTHR33413	PANTHER:PTHR33413:SF1	PFAM:PF14009
ProteinID:CDY43585	ProteinID:CDY43585.1	SEG:seg	UniParc:UPI0004EDFBE3	UniProt:A0A078HYI8	MapMan:35.2

Description

BnaC02g16820DBnaC02g16820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYI8]

Coordinates

chrLK032561:-:241317..242192

Molecular Weight (calculated)

19370.2 Da

IEP (calculated)

10.106

GRAVY (calculated)

-0.599

Length

176 amino acids

Sequence
(BLAST)

001: MGNCQAAEAA TVLIHHPSEN KVERIYWSVT ASDVMKSNPG HYVAVVVTSP TLRNEKGSLL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF TTKKCVKLMK
101: EGGGLELKKR KKHKQKTGQE TGRINRQSDP SENVGNDTVA GEDGVDGFII RRSQSGGRGR GGWRPALHSI PELGPS

Best Arabidopsis Sequence Match ( AT5G67620.1 )
(BLAST)

001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS

Arabidopsis Description

At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.