CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43585	Canola	nucleus	94.97	96.59
Bra031842.1-P	Field mustard	nucleus	98.88	92.67
CDY18668	Canola	nucleus	74.86	74.86
CDX81304	Canola	nucleus	75.98	73.91
CDY08733	Canola	nucleus	66.48	72.12
CDY36508	Canola	nucleus	65.92	71.52
VIT_00s0802g00020.t01	Wine grape	cytosol	58.1	57.78
KRH04405	Soybean	cytosol	51.4	51.69
KRH58136	Soybean	nucleus	51.96	51.67
PGSC0003DMT400055171	Potato	cytosol	49.72	50.28
Solyc02g092240.2.1	Tomato	cytosol	48.6	49.71
GSMUA_Achr9P18980_001	Banana	nucleus	27.37	47.57
GSMUA_Achr6P24780_001	Banana	cytosol	44.69	40.4
GSMUA_Achr7P26120_001	Banana	cytosol	44.69	40.0
GSMUA_Achr8P31090_001	Banana	cytosol	45.81	39.42
GSMUA_Achr7P26140_001	Banana	cytosol	37.43	38.29
Zm00001d048162_P001	Maize	nucleus	44.69	38.28
GSMUA_Achr1P22560_001	Banana	cytosol	42.46	37.62
Zm00001d028118_P001	Maize	cytosol	45.25	37.33
Os03t0200200-01	Rice	cytosol	44.69	37.21
TraesCS4B01G260900.1	Wheat	cytosol	43.58	34.98
KXG39943	Sorghum	cytosol	43.02	34.53
TraesCS4A01G039700.1	Wheat	cytosol	43.58	34.51
CDY21433	Canola	cytosol	30.17	34.39
CDY00334	Canola	nucleus	30.73	34.38
TraesCS4D01G260500.1	Wheat	cytosol	43.02	34.07
CDX84364	Canola	cytosol	30.17	33.75
CDY07805	Canola	nucleus	28.49	30.72
CDY34887	Canola	cytosol	27.93	30.12
CDY30923	Canola	cytosol	28.49	28.81
CDY70563	Canola	cytosol	28.49	28.49
CDY69854	Canola	cytosol	27.93	28.41
CDX87268	Canola	cytosol	25.14	28.12
CDY24507	Canola	cytosol	27.37	28.0
Os10t0352000-01	Rice	cytosol	22.91	24.85

Protein Annotations

EnsemblPlants:CDY37844	EnsemblPlantsGene:GSBRNA2T00064800001	InterPro:DUF4228_plant	PANTHER:PTHR33413	PANTHER:PTHR33413:SF1	PFAM:PF14009
ProteinID:CDY37844	ProteinID:CDY37844.1	SEG:seg	UniParc:UPI0004EDB382	UniProt:A0A078HKK2	MapMan:35.2

Description

BnaAnng05050DBnaAnng05050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKK2]

Coordinates

chrLK032409:+:279496..280426

Molecular Weight (calculated)

19523.4 Da

IEP (calculated)

10.082

GRAVY (calculated)

-0.573

Length

179 amino acids

Sequence
(BLAST)

001: MGNCQAAEAA TVLIHHPSEN KVERIYWSVT ASDVMKSNPG HYVAVVVSSP TLRNEKGSPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LMKEGGGLEL KKRKKHKQKT GQETGRINRQ SDPSENVAND TVAGEDGVDG FIIRRSQSGG RGGGGWRPAL HSIPELGPS

Best Arabidopsis Sequence Match ( AT5G67620.1 )
(BLAST)

001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS

Arabidopsis Description

At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.