CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037835.1-P	Field mustard	nucleus	90.5	89.5
CDX81304	Canola	nucleus	83.8	81.52
CDY37844	Canola	nucleus	74.86	74.86
CDY43585	Canola	nucleus	72.07	73.3
CDY36508	Canola	nucleus	62.01	67.27
CDY08733	Canola	nucleus	61.45	66.67
VIT_00s0802g00020.t01	Wine grape	cytosol	59.22	58.89
PGSC0003DMT400055171	Potato	cytosol	53.07	53.67
KRH58136	Soybean	nucleus	53.07	52.78
KRH04405	Soybean	cytosol	51.96	52.25
Solyc02g092240.2.1	Tomato	cytosol	50.84	52.0
GSMUA_Achr9P18980_001	Banana	nucleus	26.82	46.6
GSMUA_Achr6P24780_001	Banana	cytosol	45.81	41.41
GSMUA_Achr8P31090_001	Banana	cytosol	46.37	39.9
GSMUA_Achr7P26120_001	Banana	cytosol	43.02	38.5
GSMUA_Achr7P26140_001	Banana	cytosol	37.43	38.29
GSMUA_Achr1P22560_001	Banana	cytosol	43.02	38.12
Zm00001d048162_P001	Maize	nucleus	43.58	37.32
Os03t0200200-01	Rice	cytosol	43.58	36.28
Zm00001d028118_P001	Maize	cytosol	43.02	35.48
TraesCS4B01G260900.1	Wheat	cytosol	44.13	35.43
TraesCS4D01G260500.1	Wheat	cytosol	44.13	34.96
TraesCS4A01G039700.1	Wheat	cytosol	44.13	34.96
CDY21433	Canola	cytosol	30.17	34.39
CDY00334	Canola	nucleus	30.73	34.38
CDX84364	Canola	cytosol	30.17	33.75
KXG39943	Sorghum	cytosol	40.22	32.29
CDY30923	Canola	cytosol	31.28	31.64
CDY07805	Canola	nucleus	29.05	31.33
CDY70563	Canola	cytosol	31.28	31.28
CDY24507	Canola	cytosol	30.17	30.86
CDY34887	Canola	cytosol	28.49	30.72
CDY69854	Canola	cytosol	29.61	30.11
CDX87268	Canola	cytosol	24.58	27.5
Os10t0352000-01	Rice	cytosol	22.35	24.24

Protein Annotations

EnsemblPlants:CDY18668	EnsemblPlantsGene:GSBRNA2T00005739001	InterPro:DUF4228_plant	PANTHER:PTHR33413	PANTHER:PTHR33413:SF1	PFAM:PF14009
ProteinID:CDY18668	ProteinID:CDY18668.1	SEG:seg	UniParc:UPI0004EE5D98	UniProt:A0A078G204	MapMan:35.2

Description

BnaA09g07270DBnaA09g07270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G204]

Coordinates

chrLK032087:-:388526..389557

Molecular Weight (calculated)

19420.3 Da

IEP (calculated)

10.257

GRAVY (calculated)

-0.687

Length

179 amino acids

Sequence
(BLAST)

001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVK ASDVMRSNPG HYVAVVVTSP TLKNDKGSPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLEL NKKKKKPRKK TDQEMGRVNP NPDPKEGGAN DTVAGQEGGD GLTRQSQGRG RGGGGWRPAL HSIPEFGSS

Best Arabidopsis Sequence Match ( AT5G67620.1 )
(BLAST)

001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS

Arabidopsis Description

At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.