Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024434.1-P | Field mustard | nucleus | 96.97 | 96.97 |
| CDY08733 | Canola | nucleus | 95.76 | 95.76 |
| AT5G67620.1 | Thale cress | nucleus | 77.58 | 70.33 |
| CDY37844 | Canola | nucleus | 71.52 | 65.92 |
| CDY43585 | Canola | nucleus | 68.48 | 64.2 |
| CDY18668 | Canola | nucleus | 67.27 | 62.01 |
| CDX81304 | Canola | nucleus | 69.09 | 61.96 |
| VIT_00s0802g00020.t01 | Wine grape | cytosol | 54.55 | 50.0 |
| KRH58136 | Soybean | nucleus | 50.3 | 46.11 |
| Solyc02g092240.2.1 | Tomato | cytosol | 47.88 | 45.14 |
| PGSC0003DMT400055171 | Potato | cytosol | 47.88 | 44.63 |
| KRH04405 | Soybean | cytosol | 47.88 | 44.38 |
| GSMUA_Achr6P24780_001 | Banana | cytosol | 39.39 | 32.83 |
| GSMUA_Achr8P31090_001 | Banana | cytosol | 40.61 | 32.21 |
| GSMUA_Achr9P18980_001 | Banana | nucleus | 20.0 | 32.04 |
| Os03t0200200-01 | Rice | cytosol | 40.0 | 30.7 |
| GSMUA_Achr1P22560_001 | Banana | cytosol | 37.58 | 30.69 |
| Zm00001d048162_P001 | Maize | nucleus | 38.18 | 30.14 |
| GSMUA_Achr7P26120_001 | Banana | cytosol | 36.36 | 30.0 |
| GSMUA_Achr7P26140_001 | Banana | cytosol | 31.52 | 29.71 |
| TraesCS4B01G260900.1 | Wheat | cytosol | 39.39 | 29.15 |
| KXG39943 | Sorghum | cytosol | 39.39 | 29.15 |
| TraesCS4A01G039700.1 | Wheat | cytosol | 39.39 | 28.76 |
| CDY21433 | Canola | cytosol | 27.27 | 28.66 |
| Zm00001d028118_P001 | Maize | cytosol | 37.58 | 28.57 |
| TraesCS4D01G260500.1 | Wheat | cytosol | 38.79 | 28.32 |
| CDX84364 | Canola | cytosol | 26.67 | 27.5 |
| CDY00334 | Canola | nucleus | 26.67 | 27.5 |
| CDY30923 | Canola | cytosol | 27.27 | 25.42 |
| CDX87268 | Canola | cytosol | 24.24 | 25.0 |
| CDY07805 | Canola | nucleus | 24.85 | 24.7 |
| CDY34887 | Canola | cytosol | 24.85 | 24.7 |
| CDY70563 | Canola | cytosol | 26.67 | 24.58 |
| CDY24507 | Canola | cytosol | 26.06 | 24.57 |
| CDY69854 | Canola | cytosol | 26.06 | 24.43 |
| Os10t0352000-01 | Rice | cytosol | 18.18 | 18.18 |
Protein Annotations
| EnsemblPlants:CDY36508 | EnsemblPlantsGene:GSBRNA2T00062178001 | InterPro:DUF4228_plant | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF1 | PFAM:PF14009 |
| ProteinID:CDY36508 | ProteinID:CDY36508.1 | SEG:seg | UniParc:UPI0004EEE78C | UniProt:A0A078HI81 | MapMan:35.2 |
Description
BnaC03g48670DBnaC03g48670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI81]
Coordinates
chrLK032377:-:303865..305101
Molecular Weight (calculated)
17916.4 Da
IEP (calculated)
10.150
GRAVY (calculated)
-0.682
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDVMKSNPG HYVAVVVTSP TLRNEKGSPL KQLKLLQVLK EFATKKCVKL GKLLKEGGGL ELKKKTKKHR
101: KKTDQDHNGR VNPNSVLDPK EDVSNDDTVA GDDSGNGFMR RSYGGGRCGG GWRPALHSIP ELGSS
101: KKTDQDHNGR VNPNSVLDPK EDVSNDDTVA GDDSGNGFMR RSYGGGRCGG GWRPALHSIP ELGSS
001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
Arabidopsis Description
At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.