Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36508 | Canola | nucleus | 95.76 | 95.76 |
| Bra024434.1-P | Field mustard | nucleus | 95.15 | 95.15 |
| AT5G67620.1 | Thale cress | nucleus | 80.0 | 72.53 |
| CDY37844 | Canola | nucleus | 72.12 | 66.48 |
| CDY43585 | Canola | nucleus | 69.09 | 64.77 |
| CDX81304 | Canola | nucleus | 69.09 | 61.96 |
| CDY18668 | Canola | nucleus | 66.67 | 61.45 |
| VIT_00s0802g00020.t01 | Wine grape | cytosol | 55.15 | 50.56 |
| KRH58136 | Soybean | nucleus | 48.48 | 44.44 |
| PGSC0003DMT400055171 | Potato | cytosol | 47.27 | 44.07 |
| Solyc02g092240.2.1 | Tomato | cytosol | 46.67 | 44.0 |
| KRH04405 | Soybean | cytosol | 47.27 | 43.82 |
| GSMUA_Achr6P24780_001 | Banana | cytosol | 39.39 | 32.83 |
| GSMUA_Achr8P31090_001 | Banana | cytosol | 40.61 | 32.21 |
| GSMUA_Achr9P18980_001 | Banana | nucleus | 20.0 | 32.04 |
| Os03t0200200-01 | Rice | cytosol | 40.0 | 30.7 |
| GSMUA_Achr1P22560_001 | Banana | cytosol | 36.97 | 30.2 |
| GSMUA_Achr7P26120_001 | Banana | cytosol | 36.36 | 30.0 |
| Zm00001d048162_P001 | Maize | nucleus | 37.58 | 29.67 |
| CDY21433 | Canola | cytosol | 27.88 | 29.3 |
| GSMUA_Achr7P26140_001 | Banana | cytosol | 30.91 | 29.14 |
| TraesCS4B01G260900.1 | Wheat | cytosol | 38.79 | 28.7 |
| Zm00001d028118_P001 | Maize | cytosol | 37.58 | 28.57 |
| TraesCS4A01G039700.1 | Wheat | cytosol | 38.79 | 28.32 |
| KXG39943 | Sorghum | cytosol | 38.18 | 28.25 |
| CDX84364 | Canola | cytosol | 27.27 | 28.12 |
| CDY00334 | Canola | nucleus | 27.27 | 28.12 |
| TraesCS4D01G260500.1 | Wheat | cytosol | 38.18 | 27.88 |
| CDX87268 | Canola | cytosol | 25.45 | 26.25 |
| CDY30923 | Canola | cytosol | 27.88 | 25.99 |
| CDY07805 | Canola | nucleus | 25.45 | 25.3 |
| CDY34887 | Canola | cytosol | 25.45 | 25.3 |
| CDY24507 | Canola | cytosol | 26.67 | 25.14 |
| CDY70563 | Canola | cytosol | 27.27 | 25.14 |
| CDY69854 | Canola | cytosol | 26.67 | 25.0 |
| Os10t0352000-01 | Rice | cytosol | 16.97 | 16.97 |
Protein Annotations
| EnsemblPlants:CDY08733 | EnsemblPlantsGene:GSBRNA2T00000658001 | InterPro:DUF4228_plant | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF1 | PFAM:PF14009 |
| ProteinID:CDY08733 | ProteinID:CDY08733.1 | SEG:seg | UniParc:UPI0004EE7949 | UniProt:A0A078FAB8 | MapMan:35.2 |
Description
BnaA06g24910DBnaA06g24910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAB8]
Coordinates
chrLK031989:-:66823..68051
Molecular Weight (calculated)
17861.3 Da
IEP (calculated)
10.085
GRAVY (calculated)
-0.772
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDVMKSNPG HYVAVVVTSP TLRNEKGSPL KQLKLLQVLK EFATKKCVKL GKLLKEGGGL ELKKKTKKHR
101: KKTDQDHNGR VNPNSDLDPK EDVSNDDTVA GEDGGDGFMR RSHGGGRGGG GWRPSLHSIP ELGSS
101: KKTDQDHNGR VNPNSDLDPK EDVSNDDTVA GEDGGDGFMR RSHGGGRGGG GWRPSLHSIP ELGSS
001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
Arabidopsis Description
At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.