Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67475 | Canola | nucleus | 84.08 | 83.08 |
| Bra000943.1-P | Field mustard | nucleus | 78.42 | 76.33 |
| CDX79176 | Canola | cytosol | 10.62 | 54.87 |
| CDY48504 | Canola | nucleus | 52.05 | 54.0 |
| CDY07174 | Canola | nucleus | 57.36 | 52.67 |
| AT4G01090.1 | Thale cress | nucleus | 61.3 | 50.14 |
| CDX90032 | Canola | nucleus | 47.43 | 49.46 |
| CDY15177 | Canola | nucleus | 43.84 | 45.96 |
| CDY42041 | Canola | cytosol | 29.97 | 27.09 |
| CDX80013 | Canola | nucleus | 30.82 | 27.07 |
| CDX71720 | Canola | cytosol | 32.02 | 25.27 |
| CDY11374 | Canola | cytosol | 31.68 | 24.97 |
| CDY11373 | Canola | cytosol | 30.48 | 24.28 |
| GSMUA_Achr3P25070_001 | Banana | vacuole | 27.23 | 22.98 |
| GSMUA_Achr7P14150_001 | Banana | nucleus | 28.77 | 22.16 |
| GSMUA_Achr10P... | Banana | nucleus | 28.42 | 22.1 |
| GSMUA_Achr10P... | Banana | nucleus | 29.45 | 21.94 |
| GSMUA_Achr10P... | Banana | cytosol | 28.6 | 21.52 |
| Os01t0621300-01 | Rice | nucleus | 28.94 | 20.94 |
| TraesCS1B01G459600.2 | Wheat | plastid | 27.23 | 20.23 |
| TraesCS3D01G229400.1 | Wheat | nucleus | 27.57 | 20.2 |
| TraesCS3B01G253700.2 | Wheat | nucleus | 27.23 | 19.97 |
| TraesCS1D01G434200.2 | Wheat | nucleus | 26.54 | 19.82 |
| Os02t0258300-01 | Rice | nucleus | 28.25 | 19.6 |
| TraesCS7D01G371500.1 | Wheat | nucleus | 27.74 | 19.59 |
| TraesCS7B01G276600.1 | Wheat | nucleus | 27.74 | 19.57 |
| Zm00001d053382_P002 | Maize | nucleus | 27.57 | 19.52 |
| KXG29961 | Sorghum | nucleus | 28.77 | 19.44 |
| HORVU3Hr1G055550.3 | Barley | nucleus | 26.37 | 19.42 |
| HORVU0Hr1G021800.1 | Barley | nucleus | 27.05 | 19.39 |
| Zm00001d011373_P002 | Maize | nucleus | 26.88 | 19.36 |
| Zm00001d016081_P002 | Maize | nucleus | 28.08 | 19.25 |
| Os06t0524300-01 | Rice | nucleus | 26.71 | 19.24 |
| TraesCS1A01G425200.2 | Wheat | nucleus | 25.86 | 19.19 |
| EES03295 | Sorghum | nucleus | 26.2 | 19.17 |
| Zm00001d044191_P004 | Maize | nucleus | 26.03 | 19.14 |
| Os05t0586400-01 | Rice | nucleus | 25.51 | 19.1 |
| EER88427 | Sorghum | nucleus | 26.03 | 19.1 |
| Zm00001d046072_P001 | Maize | cytosol | 26.37 | 19.08 |
| TraesCS7A01G351500.1 | Wheat | nucleus | 26.88 | 19.08 |
| KXG22639 | Sorghum | nucleus | 25.51 | 18.81 |
| TraesCS7A01G336000.1 | Wheat | nucleus | 27.4 | 18.76 |
| TraesCS7D01G343700.1 | Wheat | cytosol | 27.23 | 18.73 |
| TraesCS3A01G224200.2 | Wheat | nucleus | 26.71 | 18.7 |
| TraesCS7B01G247600.1 | Wheat | cytosol | 26.88 | 18.67 |
| Zm00001d009716_P001 | Maize | nucleus | 23.97 | 18.32 |
| HORVU1Hr1G092980.14 | Barley | plastid | 26.54 | 17.67 |
| HORVU7Hr1G082720.10 | Barley | cytosol, nucleus | 24.66 | 16.86 |
Protein Annotations
| EnsemblPlants:CDX91876 | EnsemblPlantsGene:GSBRNA2T00153499001 | InterPro:Zinc_ribbon_12 | ncoils:Coil | PANTHER:PTHR31105 | PANTHER:PTHR31105:SF3 |
| PFAM:PF11331 | ProteinID:CDX91876 | ProteinID:CDX91876.1 | SEG:seg | UniParc:UPI0004EEA4B0 | MapMan:35.2 |
Description
BnaC03g31780D
Coordinates
chrLK031870:-:551873..555066
Molecular Weight (calculated)
64508.3 Da
IEP (calculated)
7.115
GRAVY (calculated)
-0.747
Length
584 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSRGDLVDV RSDAGSSKET TNSRHGSQRS GKSQDLVDPN SNPIEYTEQE RAELLRRLDS IKDHLLRGAV NENQQLLRPV HVHAPSPAPS YYHQRPYPYP
101: PPQGYHHQDP FRRPPLFQGY PQSGGQYADV VDPHSYYPAT PSRYGDMMPP YSPVSSHQRL YTTPVHTYNN SLSFPSSMSS PGPRGGGGGY ARWPSDLDSE
201: TGGGGAFPRG YVKKAVSDSD ARRCHPLAGG APFIACRSCF ELLYLPKKKL LAQERLHKLQ CGACSEVISF TVVDKKLVFT SCNEGTTANT VVVEEPVQEV
301: KNQGDTIRSE SQRSDDEERS SVSSEQQEKE VKSVRRRAKG SKASEPAAAA PESASLLELF EHSNVNRAAL AYGMAELGYI KPDKQEVFMK QDSVKPESIV
401: ATETEVSYNG YTNTTEISED SNGREDKNRT RNRNEDGGKS IEVWVNGHLI PEDLVSSAEK LAGPIQAGKY WYDYGAGFWG VMGKPCLGII PPFIEEFSHP
501: MPDSCAAGNT EVYVNGRELH KRDLELLVGR GLPRDKNRSY ILDISGRILD GDSGEELKSL GRLAPTIQKT KHGFGMRVPR SLAS
101: PPQGYHHQDP FRRPPLFQGY PQSGGQYADV VDPHSYYPAT PSRYGDMMPP YSPVSSHQRL YTTPVHTYNN SLSFPSSMSS PGPRGGGGGY ARWPSDLDSE
201: TGGGGAFPRG YVKKAVSDSD ARRCHPLAGG APFIACRSCF ELLYLPKKKL LAQERLHKLQ CGACSEVISF TVVDKKLVFT SCNEGTTANT VVVEEPVQEV
301: KNQGDTIRSE SQRSDDEERS SVSSEQQEKE VKSVRRRAKG SKASEPAAAA PESASLLELF EHSNVNRAAL AYGMAELGYI KPDKQEVFMK QDSVKPESIV
401: ATETEVSYNG YTNTTEISED SNGREDKNRT RNRNEDGGKS IEVWVNGHLI PEDLVSSAEK LAGPIQAGKY WYDYGAGFWG VMGKPCLGII PPFIEEFSHP
501: MPDSCAAGNT EVYVNGRELH KRDLELLVGR GLPRDKNRSY ILDISGRILD GDSGEELKSL GRLAPTIQKT KHGFGMRVPR SLAS
001: MRSRGDVSEA EGTRSDAGSS RSEEETSLKE KHSNSRAGSQ RSGKSLRNDE PNYGSDSSSK NTSSSNNPIE YTEHERAELL RRLDSIKDHL LRGGGGGNNV
101: VDKPKEPDQN QPFLRPVHLH GHANHNPGPS YYHQYPEPIQ YPGPVHGMYP QAYQDPYGYQ RRPPPVPNPN WYPPGHYPNQ MARQYPGGQY VELGPDIVEP
201: HSYYPATPGR YGDLPPYSPV SSHHREEKLA TQYSDMPPYS PVSSHHRGEK LTTPYSPRVN NGSSFPSSMG TPGPRGGYAR WPSEHDSEMG GAFARGYVKK
301: AVSDTGVRRC HPLAGGAPFI ACHSCFELLY LPKKKLLSQE RLHKLQCGAC SEVISFTIVD RKLVFSSGNE ETKPVSLEVE DRNTTNTVVI EEEVSSVDFN
401: SSGRDIPRKD EEEPVQELRN HQDTITTQSV RSESQHSDDE ERSSNSSEQQ QKEVKSVRRR GKGSKAPEPA APDNASLLEL FEYSNVNRAA LAYGMAQLGY
501: EKPDKQKSFM TQDSLKPESV ATETEVSYNG YSNTEISEDS RYSNRKGSEY GSTEITTRSS TDQNEDQMKS LEVWVNGHLI PEDLVSSAEK LAGPIQAGKY
601: WYDYRAGFWG VMGKPCLGII PPFIEEFSHP MLDNCAAGNT DVFVNGRELH KRDFELLVGR GLPRDKNRSY IVDISGRILD QDSGEELHSL GKLAPTIEKV
701: KHGFGMRVPR SLAS
101: VDKPKEPDQN QPFLRPVHLH GHANHNPGPS YYHQYPEPIQ YPGPVHGMYP QAYQDPYGYQ RRPPPVPNPN WYPPGHYPNQ MARQYPGGQY VELGPDIVEP
201: HSYYPATPGR YGDLPPYSPV SSHHREEKLA TQYSDMPPYS PVSSHHRGEK LTTPYSPRVN NGSSFPSSMG TPGPRGGYAR WPSEHDSEMG GAFARGYVKK
301: AVSDTGVRRC HPLAGGAPFI ACHSCFELLY LPKKKLLSQE RLHKLQCGAC SEVISFTIVD RKLVFSSGNE ETKPVSLEVE DRNTTNTVVI EEEVSSVDFN
401: SSGRDIPRKD EEEPVQELRN HQDTITTQSV RSESQHSDDE ERSSNSSEQQ QKEVKSVRRR GKGSKAPEPA APDNASLLEL FEYSNVNRAA LAYGMAQLGY
501: EKPDKQKSFM TQDSLKPESV ATETEVSYNG YSNTEISEDS RYSNRKGSEY GSTEITTRSS TDQNEDQMKS LEVWVNGHLI PEDLVSSAEK LAGPIQAGKY
601: WYDYRAGFWG VMGKPCLGII PPFIEEFSHP MLDNCAAGNT DVFVNGRELH KRDFELLVGR GLPRDKNRSY IVDISGRILD QDSGEELHSL GKLAPTIEKV
701: KHGFGMRVPR SLAS
Arabidopsis Description
AT4G01090 protein [Source:UniProtKB/TrEMBL;Acc:Q9M155]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.