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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • plastid 4
  • cytosol 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, peroxisome, plastid
BaCelLo:plastid
ChloroP:plastid
MultiLoc:cytosol
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX90032
CDY15177
CDY24170
CDY33620
CDY36901
CDY36943
CDY44976
CDY56983
CDY58069
CDY58070
CDY63061
CDY63062
CDY63123
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G38640.1 CDX90032 AT1G01440.1 21798944
AT5G38640.1 CDY15177 AT1G01440.1 21798944
AT5G38640.1 CDY33620 AT1G60080.1 21798944
AT5G38640.1 CDY56983 AT1G60080.1 21798944
AT5G38640.1 CDY63123 AT1G60080.1 21798944
AT5G38640.1 CDY24170 AT3G47620.1 21798944
AT5G38640.1 CDY36943 AT3G47620.1 21798944
AT5G38640.1 CDY36901 AT3G48150.1 21798944
AT5G38640.1 CDY44976 AT3G48150.1 21798944
AT5G38640.1 CDY58069 AT3G48150.1 21798944
AT5G38640.1 CDY58070 AT3G48150.1 21798944
AT5G38640.1 CDY70805 AT3G48150.1 21798944
AT5G38640.1 CDY63061 AT4G00150.1 21798944
AT5G38640.1 CDY63062 AT4G00150.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT2G44070.1 Thale cress cytosol 54.97 84.68
Os03t0645200-01 Rice cytosol, plastid 23.0 78.67
Zm00001d033223_P003 Maize cytosol 33.53 73.82
CDX74513 Canola nucleus 89.47 72.86
CDY01647 Canola cytosol 89.28 72.81
AT5G38640.1 Thale cress cytosol 86.74 69.31
VIT_14s0083g00170.t01 Wine grape cytosol 63.55 66.26
CDY27424 Canola cytosol 14.62 61.48
PGSC0003DMT400026040 Potato cytosol 70.37 56.67
Solyc02g089810.2.1 Tomato nucleus 69.59 56.04
KRH01494 Soybean nucleus 69.4 55.97
KRG93828 Soybean endoplasmic reticulum, nucleus 70.57 54.85
KRH18264 Soybean cytosol 70.37 54.78
GSMUA_Achr7P01240_001 Banana cytosol 67.45 53.56
GSMUA_Achr4P22890_001 Banana cytosol 68.42 53.42
TraesCS5B01G376300.1 Wheat mitochondrion 63.74 53.34
TraesCS5D01G384000.3 Wheat mitochondrion 63.55 53.18
TraesCS5A01G374400.3 Wheat mitochondrion 62.96 52.69
KXG24018 Sorghum mitochondrion, plastid 61.21 52.6
Zm00001d013692_P001 Maize cytosol 61.6 51.89
Os12t0617100-01 Rice mitochondrion 60.04 50.74
Zm00001d031081_P001 Maize endoplasmic reticulum, vacuole 54.0 50.73
HORVU5Hr1G092900.2 Barley mitochondrion 62.77 50.55
CDX77270 Canola mitochondrion 60.62 47.34
CDY16477 Canola mitochondrion 60.23 47.03
EER91168 Sorghum plastid 62.77 44.6
CDY03642 Canola mitochondrion 15.59 21.62
CDX96399 Canola cytosol 16.18 21.5
CDX82154 Canola mitochondrion 15.59 21.39
CDX72907 Canola cytosol 15.98 21.3
CDY36614 Canola cytosol 15.79 20.98
CDY24066 Canola cytosol 15.01 20.0
CDY28065 Canola cytosol 15.2 19.02
CDY08006 Canola extracellular 2.92 17.65
CDY34906 Canola mitochondrion 13.84 15.37
CDY24631 Canola cytosol 15.01 10.24
Protein Annotations
KEGG:00270+5.3.1.23MapMan:17.4.1.2.3.4Gene3D:3.40.50.10470GO:A0A078IGI7UniProt:A0A078IGI7EnsemblPlants:CDY49077
ProteinID:CDY49077ProteinID:CDY49077.1ncoils:CoilGO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0044237EnsemblPlantsGene:GSBRNA2T00092299001InterPro:IF-2B-relatedInterPro:NagB/RpiA_transferase-likePFAM:PF01008PANTHER:PTHR10233
PANTHER:PTHR10233:SF27MetaCyc:PWY-4361MetaCyc:PWY-7174SUPFAM:SSF100950UniPathway:UPA00904UniParc:UPI0004EE5460
SEG:seg:::::
Description
BnaC06g12410DBnaC06g12410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGI7]
Coordinates
chrLK032809:+:53294..55509
Molecular Weight (calculated)
56169.3 Da
IEP (calculated)
9.329
GRAVY (calculated)
-0.025
Length
513 amino acids
Sequence
(BLAST)
001: MESRRNPRAV VDPKVRQVGF FTSSQPDSTH PIASDSTSSP SRNSLSPPPR LPRRRLPDAF PGGVSRDLLM LPGVGMDSMA AAKSSSVPPS GLTTVSVVNM
101: PPPGLSGIIS CLYCVLSAEG GKAPLVSSGS VASANYDDES RVVKAKRRAV VKQTEAKNRV ELFRHLPQYE HGTQLPDLET KFFLLDPMHP AVYKVGLQYL
201: SGDISGGNAR CIAMLQAFQE VVKDYSTPPE KTLNRDLTAK ISSYVSFLIE CRPLSVSMGN AIRFVKNRIA KLPIMLFESE AKAALQSDIQ RFISEKIVAA
301: DKAIVRHAVT KIRDGDVLLT YGSPSAVEMV LLQAHELRKK FRVLVVDSLP KLEGQLLLRR LIKRGIDCTY THINAISYVM HEVTKVFLGA SSVLSNGTVY
401: SRVGTACVAM VASAFRVPVL VCCEAYKFHE RVQLDSICSN ELGDPNVISK VHGRGGINYL DGLTNNANLQ FLNLMYDATP SDYISMIITD YGMVPPTSVP
501: VIVREYQKEH LLV
Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)
001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV
Arabidopsis Description
At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.