Factsheet for Os03t0645200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0621300-01
Os02t0258300-01
Os02t0656300-01
Os02t0662700-01
Os02t0663100-01
Os02t0747400-01
Os02t0770800-01
Os03t0103400-01
Os04t0555000-01
Os05t0586400-01
Os06t0105350-00
Os06t0226700-01
Os06t0524300-01
Os06t0679100-00
Os08t0468100-01
Os08t0468700-00
Os10t0551200-01
Os11t0311300-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38640.1	Os01t0621300-01	AT1G01440.1	21798944
AT5G38640.1	Os02t0258300-01	AT1G01440.1	21798944
AT5G38640.1	Os05t0586400-01	AT1G01440.1	21798944
AT5G38640.1	Os06t0524300-01	AT1G01440.1	21798944
AT5G38640.1	Os02t0770800-01	AT1G37130.1	21798944
AT5G38640.1	Os08t0468100-01	AT1G37130.1	21798944
AT5G38640.1	Os08t0468700-00	AT1G37130.1	21798944
AT5G38640.1	Os11t0311300-03	AT1G60080.1	21798944
AT5G38640.1	Os02t0747400-01	AT3G47620.1	21798944
AT5G38640.1	Os06t0226700-01	AT3G47620.1	21798944
AT5G38640.1	Os02t0656300-01	AT3G48150.1	21798944
AT5G38640.1	Os06t0679100-00	AT3G48150.1	21798944
AT5G38640.1	Os02t0662700-01	AT4G00150.1	21798944
AT5G38640.1	Os02t0663100-01	AT4G00150.1	21798944
AT5G38640.1	Os03t0103400-01	AT4G00150.1	21798944
AT5G38640.1	Os04t0555000-01	AT4G00150.1	21798944
AT5G38640.1	Os06t0105350-00	AT4G00150.1	21798944
AT5G38640.1	Os10t0551200-01	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G44070.1	Thale cress	cytosol	76.0	34.23
VIT_14s0083g00170.t01	Wine grape	cytosol	82.0	25.0
TraesCS5D01G384000.3	Wheat	mitochondrion	95.33	23.33
CDY49077	Canola	cytosol, plastid	78.67	23.0
TraesCS5A01G374400.3	Wheat	mitochondrion	94.0	23.0
Zm00001d013692_P001	Maize	cytosol	93.33	22.99
TraesCS5B01G376300.1	Wheat	mitochondrion	93.33	22.84
HORVU5Hr1G092900.2	Barley	mitochondrion	92.67	21.82
KRH03820	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	77.33	20.98
Os12t0617100-01	Rice	mitochondrion	84.67	20.92
GSMUA_Achr7P01240_001	Banana	cytosol	86.0	19.97
GSMUA_Achr4P22890_001	Banana	cytosol	86.67	19.79
Zm00001d033223_P003	Maize	cytosol	30.67	19.74
EER91168	Sorghum	plastid	93.33	19.39
PGSC0003DMT400026040	Potato	cytosol	81.33	19.15
Solyc02g089810.2.1	Tomato	nucleus	80.67	19.0
VIT_17s0000g04230.t01	Wine grape	plastid	82.0	18.95
CDY01647	Canola	cytosol	79.33	18.92
KRH01494	Soybean	nucleus	80.0	18.87
CDX74513	Canola	nucleus	78.67	18.73
Bra028196.1-P	Field mustard	nucleus	78.0	18.57
AT5G38640.1	Thale cress	cytosol	79.33	18.54
PGSC0003DMT400059378	Potato	cytosol, plastid	76.0	18.39
KRG93828	Soybean	endoplasmic reticulum, nucleus	80.67	18.33
KRH18264	Soybean	cytosol	80.0	18.21
Solyc12g038340.1.1	Tomato	nucleus	72.0	17.42
Bra014165.1-P	Field mustard	mitochondrion	71.33	16.29
CDY16477	Canola	mitochondrion	71.33	16.29
CDX77270	Canola	mitochondrion	71.33	16.29
KRH54799	Soybean	plastid	72.67	15.98
AT1G48970.1	Thale cress	mitochondrion	68.67	15.47
Os12t0497400-01	Rice	cytosol	26.67	10.53
Os10t0392700-02	Rice	cytosol, mitochondrion, plastid	14.0	6.25
CDY27424	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Os03t0645200-01	EnsemblPlantsGene:Os03g0645200	Gene3D:3.40.50.10470	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related
InterPro:NagB/RpiA_transferase-like	KEGG:00270+5.3.1.23	PANTHER:PTHR10233	PANTHER:PTHR10233:SF27	PFAM:PF01008	ProteinID:BAF12678.1
ProteinID:BAS85468.1	SUPFAM:SSF100950	UniParc:UPI0000E12173	UniProt:Q0DQ10	MapMan:17.4.1.2.3.4	:

Description

Similar to Translation initiation factor eIF-2B delta subunit (eIF-2B GDP-GTP exchange factor). (Os03t0645200-01)

Coordinates

chr3:-:24905586..24907886

Molecular Weight (calculated)

16545.0 Da

IEP (calculated)

5.974

GRAVY (calculated)

0.177

Length

150 amino acids

Sequence
(BLAST)

001: KGINCTYTHI NAISYIMHEV TRVFLGASSI LSNGTVYSRV GTASVAMVAH AFGIPVLVCC EAYKFHERVQ LDSICANELG DPDVILKVPG KADLGHLKNL
101: ADNENLQLLN LTYDATPSDY VSMIITDYGM LPPTSVPVIV REYRKEQLWI

Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)

001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV

Arabidopsis Description

At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.