Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74513 | Canola | nucleus | 90.19 | 91.9 |
| Bra028196.1-P | Field mustard | nucleus | 89.88 | 91.59 |
| CDY01647 | Canola | cytosol | 89.1 | 90.94 |
| AT2G44070.1 | Thale cress | cytosol | 46.26 | 89.19 |
| CDY49077 | Canola | cytosol, plastid | 69.31 | 86.74 |
| Os03t0645200-01 | Rice | cytosol, plastid | 18.54 | 79.33 |
| VIT_14s0083g00170.t01 | Wine grape | cytosol | 58.41 | 76.22 |
| Zm00001d033223_P003 | Maize | cytosol | 26.79 | 73.82 |
| PGSC0003DMT400026040 | Potato | cytosol | 66.98 | 67.5 |
| KRH01494 | Soybean | nucleus | 66.82 | 67.45 |
| Solyc02g089810.2.1 | Tomato | nucleus | 65.89 | 66.41 |
| KRG93828 | Soybean | endoplasmic reticulum, nucleus | 66.98 | 65.15 |
| KRH18264 | Soybean | cytosol | 66.82 | 65.1 |
| GSMUA_Achr4P22890_001 | Banana | cytosol | 65.42 | 63.93 |
| TraesCS5B01G376300.1 | Wheat | mitochondrion | 60.9 | 63.78 |
| TraesCS5D01G384000.3 | Wheat | mitochondrion | 60.75 | 63.62 |
| TraesCS5A01G374400.3 | Wheat | mitochondrion | 60.28 | 63.13 |
| KXG24018 | Sorghum | mitochondrion, plastid | 58.41 | 62.81 |
| GSMUA_Achr7P01240_001 | Banana | cytosol | 62.77 | 62.38 |
| Zm00001d013692_P001 | Maize | cytosol | 58.72 | 61.9 |
| Zm00001d031081_P001 | Maize | endoplasmic reticulum, vacuole | 52.18 | 61.36 |
| HORVU5Hr1G092900.2 | Barley | mitochondrion | 60.12 | 60.6 |
| Os12t0617100-01 | Rice | mitochondrion | 57.17 | 60.46 |
| AT1G48970.1 | Thale cress | mitochondrion | 56.07 | 54.05 |
| EER91168 | Sorghum | plastid | 59.35 | 52.77 |
| AT1G53880.1 | Thale cress | cytosol | 14.17 | 23.64 |
| AT1G72340.2 | Thale cress | cytosol, plastid | 14.17 | 22.25 |
| AT3G07300.3 | Thale cress | cytosol | 12.77 | 20.05 |
| AT1G53900.2 | Thale cress | mitochondrion | 14.17 | 15.07 |
Protein Annotations
| KEGG:00270+5.3.1.23 | MapMan:17.4.1.2.3.4 | Gene3D:3.40.50.10470 | EntrezGene:833854 | ProteinID:AED94344.1 | ArrayExpress:AT5G38640 |
| EnsemblPlantsGene:AT5G38640 | RefSeq:AT5G38640 | TAIR:AT5G38640 | RefSeq:AT5G38640-TAIR-G | EnsemblPlants:AT5G38640.1 | TAIR:AT5G38640.1 |
| EMBL:AY062523 | Unigene:At.59507 | ProteinID:BAB10154.1 | EMBL:BT008788 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0044237 | InterPro:IF-2B-related | RefSeq:NP_198680.1 | InterPro:NagB/RpiA_transferase-like |
| PFAM:PF01008 | PO:PO:0000005 | PO:PO:0000293 | PANTHER:PTHR10233 | PANTHER:PTHR10233:SF27 | UniProt:Q9FFV8 |
| SUPFAM:SSF100950 | UniParc:UPI00000AA995 | SEG:seg | : | : | : |
Description
At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
Coordinates
chr5:-:15467679..15470724
Molecular Weight (calculated)
69499.3 Da
IEP (calculated)
9.892
GRAVY (calculated)
-0.256
Length
642 amino acids
Sequence
(BLAST)
(BLAST)
001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.