Factsheet for AT1G53900.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G53880.1	Thale cress	cytosol	63.74	100.0
CDY36614	Canola	cytosol	57.62	90.16
Bra039699.1-P	Field mustard	cytosol	56.46	89.03
CDY24066	Canola	cytosol	56.46	88.57
GSMUA_Achr11P...	Banana	cytosol	38.41	83.75
KRH69015	Soybean	cytosol	50.99	80.63
KRG97288	Soybean	extracellular	51.99	79.29
KRH47707	Soybean	cytosol	45.53	79.25
AT1G72340.2	Thale cress	cytosol, plastid	53.48	78.97
PGSC0003DMT400074245	Potato	cytosol	51.66	78.2
Solyc12g049580.1.1	Tomato	nucleus	51.16	75.55
GSMUA_Achr8P16800_001	Banana	mitochondrion, plastid	48.68	74.62
TraesCS5D01G121400.1	Wheat	cytosol	44.54	74.31
TraesCS5A01G109200.2	Wheat	cytosol	44.54	74.31
HORVU5Hr1G038720.1	Barley	cytosol	44.37	74.03
OQU79155	Sorghum	cytosol	44.7	73.77
Zm00001d041758_P001	Maize	cytoskeleton, cytosol, peroxisome	44.21	73.55
Os12t0497400-01	Rice	cytosol	45.2	71.84
TraesCS5B01G113900.1	Wheat	cytosol	39.9	69.25
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	65.73	68.57
AT2G44070.1	Thale cress	cytosol	12.25	22.22
AT3G07300.3	Thale cress	cytosol	12.91	19.07
AT5G38640.1	Thale cress	cytosol	15.07	14.17
AT1G48970.1	Thale cress	mitochondrion	14.4	13.06

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1070	MapMan:17.4.1.2.3.1	Gene3D:3.20.90.20	Gene3D:3.40.50.10470	EntrezGene:841825
EntrezGene:841828	UniProt:A0A1P8AT59	ProteinID:AEE33014.2	ProteinID:AEE33020.1	ProteinID:ANM59843.1	ProteinID:ANM59844.1
ArrayExpress:AT1G53900	EnsemblPlantsGene:AT1G53900	RefSeq:AT1G53900	TAIR:AT1G53900	RefSeq:AT1G53900-TAIR-G	EnsemblPlants:AT1G53900.2
Unigene:At.27783	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0044237	InterPro:IF-2B-related	InterPro:IPR025659	InterPro:IPR038595	InterPro:LOR
InterPro:LOR_sf	RefSeq:NP_001322172.1	RefSeq:NP_001322173.1	RefSeq:NP_564643.3	RefSeq:NP_564646.3	InterPro:NagB/RpiA_transferase-like
PFAM:PF01008	PFAM:PF04525	PANTHER:PTHR10233	PANTHER:PTHR10233:SF18	SUPFAM:SSF100950	SUPFAM:SSF54518
InterPro:Tubby-like_C	UniParc:UPI000848FCCF	SEG:seg	:	:	:

Description

Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:TAIR;Acc:AT1G53900]

Coordinates

chr1:+:20127545..20131050

Molecular Weight (calculated)

67949.9 Da

IEP (calculated)

8.560

GRAVY (calculated)

-0.194

Length

604 amino acids

Sequence
(BLAST)

001: MQIYSNNRTM RTKFSLNLIS PAKNMVKIHP DKAFPVDFSV GEGKTSPYLT TEKESFTIWM RSLVFHSKGC TVFDSKGNLI YRVDNYNSKS CSEVYLMDLY
101: GKILFTLRQK KLGLFKSWKG YNSTGTRFQL RKNFKILPKG SSSSYKVVMG SRIVDGDHQS CYKIVKRKSV FTIEDGSGRL LAEVKKKQSN IKSLDLGKDV
201: LTMMVEPQLE TEIFEEFIKM WRESASFILD KHQNNKPISL THSIDSPPPP SASMADENPN PNPISAYYQT RAAHHGIVTS EWLEQAQAAV RRYPDRDSLV
301: SGRPFSVIED FNSWRQQPDL AEAVAAIRAL AAVIRASEAT TMMELEIELK KASDTLKSWD TTSISLTAGC DLFMRYVTRT SALEFEDFNS AKSRVLERAE
401: KFGEISCKAR TIIAMLSQDF IFDGCTILVH GFSRVVFEIL KTSAQNKKLF RVLCTEGRPD KTGVLLANEL AKLDIPVKLL IDSAVAYSMD EVDMVFVGAD
501: GVVESGGIIN MMGTYQIALV AQSMNKPVYV AAESYKFARL YPLDQKDLEP ALRPIDFSVP VPPKVEVERS ARDYTPPQYL TLLFTDLGVL TPSVVSDELI
601: QLYL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.