Factsheet for VIT_09s0002g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0057g00690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53880.1	VIT_12s0057g00690.t01	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69015	Soybean	cytosol	56.99	86.39
Bra041170.1-P	Field mustard	cytosol, mitochondrion	10.88	86.3
GSMUA_Achr11P...	Banana	cytosol	41.28	86.28
Bra008029.1-P	Field mustard	cytosol	52.16	85.8
KRG97288	Soybean	extracellular	58.38	85.35
CDY03642	Canola	mitochondrion	54.4	85.14
CDX82154	Canola	mitochondrion	54.4	84.22
PGSC0003DMT400074245	Potato	cytosol	57.86	83.96
KRH47707	Soybean	cytosol	49.91	83.29
CDX72907	Canola	cytosol	54.4	81.82
AT1G53880.1	Thale cress	cytosol	54.4	81.82
CDX96399	Canola	cytosol	54.06	81.09
Solyc12g049580.1.1	Tomato	nucleus	56.99	80.68
Bra039699.1-P	Field mustard	cytosol	53.02	80.16
CDY36614	Canola	cytosol	53.37	80.05
CDY24066	Canola	cytosol	52.85	79.48
AT1G72340.2	Thale cress	cytosol, plastid	55.61	78.73
GSMUA_Achr8P16800_001	Banana	mitochondrion, plastid	53.37	78.43
Zm00001d041758_P001	Maize	cytoskeleton, cytosol, peroxisome	48.19	76.86
TraesCS5A01G109200.2	Wheat	cytosol	47.84	76.52
TraesCS5D01G121400.1	Wheat	cytosol	47.84	76.52
OQU79155	Sorghum	cytosol	48.36	76.5
HORVU5Hr1G038720.1	Barley	cytosol	47.67	76.24
Os12t0497400-01	Rice	cytosol	49.05	74.74
TraesCS5B01G113900.1	Wheat	cytosol	43.01	71.55
AT1G53900.2	Thale cress	mitochondrion	68.57	65.73
VIT_06s0009g01100.t01	Wine grape	plastid	11.57	34.72
VIT_13s0139g00250.t01	Wine grape	cytosol	13.64	18.94
VIT_14s0083g00170.t01	Wine grape	cytosol	14.68	17.28
VIT_17s0000g04230.t01	Wine grape	plastid	14.34	12.79

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1070	EntrezGene:100244672	wikigene:100244672	EntrezGene:100855365	wikigene:100855365
MapMan:17.4.1.2.3.1	Gene3D:3.20.90.20	Gene3D:3.40.50.10470	EMBL:AM483757	ProteinID:CAN62132	ProteinID:CAN62132.1
ProteinID:CAN62133	ProteinID:CAN62133.1	ProteinID:CBI35801	ProteinID:CBI35801.3	ncoils:Coil	UniProt:D7TZK5
EMBL:FN596494	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related	InterPro:IPR025659	InterPro:IPR038595
EntrezGene:LOC100244672	wikigene:LOC100244672	EntrezGene:LOC100855365	wikigene:LOC100855365	InterPro:LOR	InterPro:LOR_sf
InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PFAM:PF04525	PANTHER:PTHR10233	PANTHER:PTHR10233:SF18	SUPFAM:SSF100950
SUPFAM:SSF54518	TIGR:TC54074	InterPro:Tubby-like_C	UniParc:UPI0001BE49C4	ArrayExpress:VIT_09s0002g00390	EnsemblPlantsGene:VIT_09s0002g00390
EnsemblPlants:VIT_09s0002g00390.t01	RefSeq:XP_002271332	RefSeq:XP_002271332.2	RefSeq:XP_003632774	RefSeq:XP_003632774.1	SEG:seg

Description

No Description!

Coordinates

chr9:+:296820..302119

Molecular Weight (calculated)

64976.4 Da

IEP (calculated)

8.140

GRAVY (calculated)

-0.150

Length

579 amino acids

Sequence
(BLAST)

001: MARVHPQSLL SSAHCYFTSK QEVFTIWMKS LVLHGKGCTV FDSNGGIVYR VDNYDRKCSN EVYLMDFRGK VLYTILRKRF KFFCCWEGYC AAKEIKQGKP
101: GFRVRSKTFG ILRGGSPFKA VVGLDKNQPC QIKIEKRTSS NSTCKIVDEL GLLVAEVKRK TSKCGVVLGD DVLTMVVEPY IDHSLRERLL MWWRSASFIL
201: DKGQNDEVQD ESESLRLSPS NTSMADTLQN PNPKISAYYQ TRADHHGVVT SDWLAQAQAA VGRHPDDLPP PKVEDSGKPF SVIDEFNSWR KQPDLAEAVA
301: AIRALASVIR FSQATTMMEL EIELKKASDS LKSWDTTSIS LTAGCDLFMR YVTRTSALEY ENFNSAKSRL IERAERFGEI SYKARRIIAM LGQDFIFDGC
401: TILVHGFSRV VLEVLKTAAQ NKKLFRVFCT EGRPDRTGLR LSNEMAKLDV PVKLLIDSAV AYTMDEVDMV FVGADGVVES GGIINMMGTY QIALVAHSMN
501: KPVYVAAESY KFARLYPLDQ KDMAPALRPI DFGVPIPSKV EVETSARDYT PPQYLTLLFT DLGVLTPSVV SDELIQLYL

Best Arabidopsis Sequence Match ( AT1G53900.2 )
(BLAST)

001: MQIYSNNRTM RTKFSLNLIS PAKNMVKIHP DKAFPVDFSV GEGKTSPYLT TEKESFTIWM RSLVFHSKGC TVFDSKGNLI YRVDNYNSKS CSEVYLMDLY
101: GKILFTLRQK KLGLFKSWKG YNSTGTRFQL RKNFKILPKG SSSSYKVVMG SRIVDGDHQS CYKIVKRKSV FTIEDGSGRL LAEVKKKQSN IKSLDLGKDV
201: LTMMVEPQLE TEIFEEFIKM WRESASFILD KHQNNKPISL THSIDSPPPP SASMADENPN PNPISAYYQT RAAHHGIVTS EWLEQAQAAV RRYPDRDSLV
301: SGRPFSVIED FNSWRQQPDL AEAVAAIRAL AAVIRASEAT TMMELEIELK KASDTLKSWD TTSISLTAGC DLFMRYVTRT SALEFEDFNS AKSRVLERAE
401: KFGEISCKAR TIIAMLSQDF IFDGCTILVH GFSRVVFEIL KTSAQNKKLF RVLCTEGRPD KTGVLLANEL AKLDIPVKLL IDSAVAYSMD EVDMVFVGAD
501: GVVESGGIIN MMGTYQIALV AQSMNKPVYV AAESYKFARL YPLDQKDLEP ALRPIDFSVP VPPKVEVERS ARDYTPPQYL TLLFTDLGVL TPSVVSDELI
601: QLYL

Arabidopsis Description

Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:TAIR;Acc:AT1G53900]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.