Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G53880.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT1G53880.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039699.1-P | Field mustard | cytosol | 98.96 | 99.48 |
| CDY36614 | Canola | cytosol | 97.4 | 97.15 |
| AT1G53880.1 | Thale cress | cytosol | 88.57 | 88.57 |
| GSMUA_Achr11P... | Banana | cytosol | 60.0 | 83.39 |
| CDY03642 | Canola | mitochondrion | 77.4 | 80.54 |
| CDX82154 | Canola | mitochondrion | 77.4 | 79.68 |
| KRH47707 | Soybean | cytosol | 71.17 | 78.96 |
| KRH69015 | Soybean | cytosol | 77.66 | 78.27 |
| CDX72907 | Canola | cytosol | 78.18 | 78.18 |
| CDX96399 | Canola | cytosol | 77.92 | 77.72 |
| PGSC0003DMT400074245 | Potato | cytosol | 79.22 | 76.44 |
| KRG97288 | Soybean | extracellular | 76.36 | 74.24 |
| Solyc12g049580.1.1 | Tomato | nucleus | 78.44 | 73.84 |
| GSMUA_Achr8P16800_001 | Banana | mitochondrion, plastid | 75.32 | 73.6 |
| TraesCS5D01G121400.1 | Wheat | cytosol | 68.31 | 72.65 |
| TraesCS5A01G109200.2 | Wheat | cytosol | 68.31 | 72.65 |
| Zm00001d041758_P001 | Maize | cytoskeleton, cytosol, peroxisome | 68.31 | 72.45 |
| HORVU5Hr1G038720.1 | Barley | cytosol | 68.05 | 72.38 |
| OQU79155 | Sorghum | cytosol | 68.57 | 72.13 |
| Os12t0497400-01 | Rice | cytosol | 69.35 | 70.26 |
| TraesCS5B01G113900.1 | Wheat | cytosol | 62.34 | 68.97 |
| AT1G53900.2 | Thale cress | mitochondrion | 88.57 | 56.46 |
| VIT_09s0002g00390.t01 | Wine grape | mitochondrion, plastid | 79.48 | 52.85 |
| CDY28065 | Canola | cytosol | 21.04 | 19.76 |
| CDY08006 | Canola | extracellular | 4.16 | 18.82 |
| CDY34906 | Canola | mitochondrion | 19.22 | 16.02 |
| CDY49077 | Canola | cytosol, plastid | 20.0 | 15.01 |
| CDY01647 | Canola | cytosol | 23.64 | 14.47 |
| CDX74513 | Canola | nucleus | 23.38 | 14.29 |
| CDX77270 | Canola | mitochondrion | 23.64 | 13.85 |
| CDY16477 | Canola | mitochondrion | 23.38 | 13.7 |
| CDY27424 | Canola | cytosol | 3.64 | 11.48 |
| CDY24631 | Canola | cytosol | 20.78 | 10.64 |
Protein Annotations
| KEGG:00270+5.3.1.23 | Gene3D:1.20.120.1070 | MapMan:17.4.1.2.3.1 | Gene3D:3.40.50.10470 | GO:A0A078GFC5 | UniProt:A0A078GFC5 |
| EnsemblPlants:CDY24066 | ProteinID:CDY24066 | ProteinID:CDY24066.1 | ncoils:Coil | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0044237 | EnsemblPlantsGene:GSBRNA2T00024605001 | InterPro:IF-2B-related | InterPro:NagB/RpiA_transferase-like | PFAM:PF01008 |
| PANTHER:PTHR10233 | PANTHER:PTHR10233:SF18 | MetaCyc:PWY-4361 | MetaCyc:PWY-7174 | SUPFAM:SSF100950 | UniPathway:UPA00904 |
| UniParc:UPI0004EE4D5B | SEG:seg | : | : | : | : |
Description
BnaA06g00640DBnaA06g00640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFC5]
Coordinates
chrLK032153:-:246603..248993
Molecular Weight (calculated)
42905.7 Da
IEP (calculated)
6.008
GRAVY (calculated)
-0.069
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MWRRSASFVL DKHHNNKPIS LTPSLDSMAE VNPNPNPNPN PNPISAYYQT RAKHHGIVTS DWLEQAQAAV VRYPDKDSPV AGRRPFSVIE EFDCWRQQPD
101: LAEAVAAVRA LAAVIRASEA TTMMELEIEL KKASDTLKSW DTTSISLTAG CDLFMRYVTR TSALEFEDFN AAKARVLGRA EKFGEISYKA RKIIAVLSQD
201: FIFDWCTILV HGFSRVVLEI LKTAAQNKKL FRVLCTEGRP DKTGVLLAKE LAKLDVPVKL LIDSAVAYSM DEVDMVIFGA DGVVESGGVI NMMGTYQIAL
301: VAHTMNKPVY VAAESYKFAR LYPLDQKDLE PALRPVDFGV PVPPKVEVER SARDYTPPQY LTMLFTDLGV LTPSVVSDEL IQLYL
101: LAEAVAAVRA LAAVIRASEA TTMMELEIEL KKASDTLKSW DTTSISLTAG CDLFMRYVTR TSALEFEDFN AAKARVLGRA EKFGEISYKA RKIIAVLSQD
201: FIFDWCTILV HGFSRVVLEI LKTAAQNKKL FRVLCTEGRP DKTGVLLAKE LAKLDVPVKL LIDSAVAYSM DEVDMVIFGA DGVVESGGVI NMMGTYQIAL
301: VAHTMNKPVY VAAESYKFAR LYPLDQKDLE PALRPVDFGV PVPPKVEVER SARDYTPPQY LTMLFTDLGV LTPSVVSDEL IQLYL
001: MQIYSNNRTM RTKFSLNLIS PAKNMVKIHP DKAFPVDFSV GEGKTSPYLT TEKESFTIWM RSLVFHSKGC TVFDSKGNLI YRVDNYNSKS CSEVYLMDLY
101: GKILFTLRQK KLGLFKSWKG YNSTGTRFQL RKNFKILPKG SSSSYKVVMG SRIVDGDHQS CYKIVKRKSV FTIEDGSGRL LAEVKKKQSN IKSLDLGKDV
201: LTMMVEPQLE TEIFEEFIKM WRESASFILD KHQNNKPISL THSIDSPPPP SASMADENPN PNPISAYYQT RAAHHGIVTS EWLEQAQAAV RRYPDRDSLV
301: SGRPFSVIED FNSWRQQPDL AEAVAAIRAL AAVIRASEAT TMMELEIELK KASDTLKSWD TTSISLTAGC DLFMRYVTRT SALEFEDFNS AKSRVLERAE
401: KFGEISCKAR TIIAMLSQDF IFDGCTILVH GFSRVVFEIL KTSAQNKKLF RVLCTEGRPD KTGVLLANEL AKLDIPVKLL IDSAVAYSMD EVDMVFVGAD
501: GVVESGGIIN MMGTYQIALV AQSMNKPVYV AAESYKFARL YPLDQKDLEP ALRPIDFSVP VPPKVEVERS ARDYTPPQYL TLLFTDLGVL TPSVVSDELI
601: QLYL
101: GKILFTLRQK KLGLFKSWKG YNSTGTRFQL RKNFKILPKG SSSSYKVVMG SRIVDGDHQS CYKIVKRKSV FTIEDGSGRL LAEVKKKQSN IKSLDLGKDV
201: LTMMVEPQLE TEIFEEFIKM WRESASFILD KHQNNKPISL THSIDSPPPP SASMADENPN PNPISAYYQT RAAHHGIVTS EWLEQAQAAV RRYPDRDSLV
301: SGRPFSVIED FNSWRQQPDL AEAVAAIRAL AAVIRASEAT TMMELEIELK KASDTLKSWD TTSISLTAGC DLFMRYVTRT SALEFEDFNS AKSRVLERAE
401: KFGEISCKAR TIIAMLSQDF IFDGCTILVH GFSRVVFEIL KTSAQNKKLF RVLCTEGRPD KTGVLLANEL AKLDIPVKLL IDSAVAYSMD EVDMVFVGAD
501: GVVESGGIIN MMGTYQIALV AQSMNKPVYV AAESYKFARL YPLDQKDLEP ALRPIDFSVP VPPKVEVERS ARDYTPPQYL TLLFTDLGVL TPSVVSDELI
601: QLYL
Arabidopsis Description
Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:TAIR;Acc:AT1G53900]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.