Factsheet for AT1G53880.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36614	Canola	cytosol	90.39	90.16
Bra039699.1-P	Field mustard	cytosol	88.57	89.03
CDY24066	Canola	cytosol	88.57	88.57
GSMUA_Achr11P...	Banana	cytosol	60.26	83.75
KRH69015	Soybean	cytosol	80.0	80.63
KRH47707	Soybean	cytosol	71.43	79.25
PGSC0003DMT400074245	Potato	cytosol	81.04	78.2
KRG97288	Soybean	extracellular	79.22	77.02
AT1G72340.2	Thale cress	cytosol, plastid	81.82	77.02
Solyc12g049580.1.1	Tomato	nucleus	80.26	75.55
GSMUA_Achr8P16800_001	Banana	mitochondrion, plastid	76.36	74.62
TraesCS5D01G121400.1	Wheat	cytosol	69.87	74.31
TraesCS5A01G109200.2	Wheat	cytosol	69.87	74.31
HORVU5Hr1G038720.1	Barley	cytosol	69.61	74.03
OQU79155	Sorghum	cytosol	70.13	73.77
Zm00001d041758_P001	Maize	cytoskeleton, cytosol, peroxisome	69.35	73.55
Os12t0497400-01	Rice	cytosol	70.91	71.84
TraesCS5B01G113900.1	Wheat	cytosol	62.6	69.25
AT1G53900.2	Thale cress	mitochondrion	100.0	63.74
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	81.82	54.4
AT2G44070.1	Thale cress	cytosol	19.22	22.22
AT3G07300.3	Thale cress	cytosol	20.26	19.07
AT5G38640.1	Thale cress	cytosol	23.64	14.17
AT1G48970.1	Thale cress	mitochondrion	22.6	13.06

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1070	MapMan:17.4.1.2.3.1	Gene3D:3.40.50.10470	EntrezGene:841825	ProteinID:AEE33014.2
ArrayExpress:AT1G53880	EnsemblPlantsGene:AT1G53880	RefSeq:AT1G53880	TAIR:AT1G53880	RefSeq:AT1G53880-TAIR-G	EnsemblPlants:AT1G53880.1
TAIR:AT1G53880.1	ncoils:Coil	UniProt:F4HTE0	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0044237	InterPro:IF-2B-related	RefSeq:NP_564643.3	InterPro:NagB/RpiA_transferase-like
PFAM:PF01008	PO:PO:0000293	PANTHER:PTHR10233	PANTHER:PTHR10233:SF18	SUPFAM:SSF100950	UniParc:UPI00084911AC
SEG:seg	:	:	:	:	:

Description

Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:TAIR;Acc:AT1G53880]

Coordinates

chr1:+:20115874..20118434

Molecular Weight (calculated)

42813.3 Da

IEP (calculated)

4.869

GRAVY (calculated)

-0.075

Length

385 amino acids

Sequence
(BLAST)

001: MWRESASFIL DKHQNNKPIS LTHSIDSPPP PSASMADENP NPNPISAYYQ TRAAHHGIVT SEWLEQAQAA VRRYPDRDSL VSGRPFSVIE DFNSWRQQPD
101: LAEAVAAIRA LAAVIRASEA TTMMELEIEL KKASDTLKSW DTTSISLTAG CDLFMRYVTR TSALEFEDFN SAKSRVLERA EKFGEISCKA RTIIAMLSQD
201: FIFDGCTILV HGFSRVVFEI LKTSAQNKKL FRVLCTEGRP DKTGVLLANE LAKLDIPVKL LIDSAVAYSM DEVDMVFVGA DGVVESGGII NMMGTYQIAL
301: VAQSMNKPVY VAAESYKFAR LYPLDQKDLE PALRPIDFSV PVPPKVEVER SARDYTPPQY LTLLFTDLGV LTPSVVSDEL IQLYL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.