CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14106
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53880.1	KRH14106	AT5G35750.1	18642946
AT1G53880.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97288	Soybean	extracellular	92.93	89.65
GSMUA_Achr11P...	Banana	cytosol	63.09	87.0
KRH47707	Soybean	cytosol	78.53	86.46
Bra041170.1-P	Field mustard	cytosol, mitochondrion	16.23	84.93
Bra008029.1-P	Field mustard	cytosol	78.01	84.66
CDY03642	Canola	mitochondrion	80.63	83.24
CDX82154	Canola	mitochondrion	80.1	81.82
AT1G53880.1	Thale cress	cytosol	80.63	80.0
CDX72907	Canola	cytosol	80.63	80.0
PGSC0003DMT400074245	Potato	cytosol	82.98	79.45
CDX96399	Canola	cytosol	80.1	79.27
Bra039699.1-P	Field mustard	cytosol	78.53	78.33
CDY36614	Canola	cytosol	78.53	77.72
CDY24066	Canola	cytosol	78.27	77.66
Zm00001d041758_P001	Maize	cytoskeleton, cytosol, peroxisome	73.56	77.41
TraesCS5D01G121400.1	Wheat	cytosol	73.04	77.07
TraesCS5A01G109200.2	Wheat	cytosol	73.04	77.07
HORVU5Hr1G038720.1	Barley	cytosol	72.77	76.8
Solyc12g049580.1.1	Tomato	nucleus	81.94	76.53
OQU79155	Sorghum	cytosol	73.3	76.5
GSMUA_Achr8P16800_001	Banana	mitochondrion, plastid	78.8	76.4
Os12t0497400-01	Rice	cytosol	74.35	74.74
AT1G72340.2	Thale cress	cytosol, plastid	79.58	74.33
TraesCS5B01G113900.1	Wheat	cytosol	65.71	72.13
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	86.39	56.99
AT1G53900.2	Thale cress	mitochondrion	80.63	50.99
KRH48472	Soybean	endoplasmic reticulum	20.16	18.55
KRH39206	Soybean	cytosol	20.16	18.55
KRH30036	Soybean	cytosol	19.63	18.07
KRH03820	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	24.08	16.64
KRH01494	Soybean	nucleus	23.56	14.15
KRH18264	Soybean	cytosol	24.35	14.11
KRG93828	Soybean	endoplasmic reticulum, nucleus	24.08	13.94
KRH54799	Soybean	plastid	24.87	13.93

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1070	EntrezGene:100799015	MapMan:17.4.1.2.3.1	Gene3D:3.40.50.10470	EMBL:ACUP02002129
EnsemblPlantsGene:GLYMA_03G263500	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	UniProt:I1JS74	InterPro:IF-2B-related	EnsemblPlants:KRH69015
ProteinID:KRH69015	ProteinID:KRH69015.1	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF18
MetaCyc:PWY-4361	MetaCyc:PWY-7174	SUPFAM:SSF100950	UniParc:UPI000233A92B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:45652777..45654967

Molecular Weight (calculated)

42670.0 Da

IEP (calculated)

5.046

GRAVY (calculated)

-0.150

Length

382 amino acids

Sequence
(BLAST)

001: MWWRSASFIM DRQRNEEADL KGDSSNPNPN PNISAYYETR AAHHGVVTSD WLAQAQAAIG PDPVPDPNPE PEPQLRPDPD KPFSVIDEFN SWRKQPHLAE
101: AVAAIRALAA VIRSSKATTM MQLEIELKKA SDFLKSWDTT SISLTAGCDL FMRYVTRTSA LEYEDFNSAK SRLIERAEKF GEISYKARKV IAMLSQDFIF
201: DGCTILVHGF SRVVFEVLKL AAQNNKLFRV FCTEGRPDRT GLRLSNELAK LDVSVKLLID SAVAYTMDEV DMVFVGADGV VESGGIINMM GTYQIALVAH
301: SMNKPVYVAA ESYKFARLYP LDQKDLAPAL RPIDFGVPIP SKVEVERSAR DYTPPQYLTL LFTDLGVLTP SVVSDELIQL YL

Best Arabidopsis Sequence Match ( AT1G53900.2 )
(BLAST)

001: MQIYSNNRTM RTKFSLNLIS PAKNMVKIHP DKAFPVDFSV GEGKTSPYLT TEKESFTIWM RSLVFHSKGC TVFDSKGNLI YRVDNYNSKS CSEVYLMDLY
101: GKILFTLRQK KLGLFKSWKG YNSTGTRFQL RKNFKILPKG SSSSYKVVMG SRIVDGDHQS CYKIVKRKSV FTIEDGSGRL LAEVKKKQSN IKSLDLGKDV
201: LTMMVEPQLE TEIFEEFIKM WRESASFILD KHQNNKPISL THSIDSPPPP SASMADENPN PNPISAYYQT RAAHHGIVTS EWLEQAQAAV RRYPDRDSLV
301: SGRPFSVIED FNSWRQQPDL AEAVAAIRAL AAVIRASEAT TMMELEIELK KASDTLKSWD TTSISLTAGC DLFMRYVTRT SALEFEDFNS AKSRVLERAE
401: KFGEISCKAR TIIAMLSQDF IFDGCTILVH GFSRVVFEIL KTSAQNKKLF RVLCTEGRPD KTGVLLANEL AKLDIPVKLL IDSAVAYSMD EVDMVFVGAD
501: GVVESGGIIN MMGTYQIALV AQSMNKPVYV AAESYKFARL YPLDQKDLEP ALRPIDFSVP VPPKVEVERS ARDYTPPQYL TLLFTDLGVL TPSVVSDELI
601: QLYL

Arabidopsis Description

Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:TAIR;Acc:AT1G53900]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.